Gene detail

Detail information of GWHGAAZE023574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006361250.1	5.6277E-157	PREDICTED: disease resistance protein RPM1-like [Solanum tuberosum]
COG	YP_007072967.1	0.000006	small GTP-binding protein
Swissprot	tr\|Q39214\|RPM1_ARATH	5E-92	Disease resistance protein RPM1
trEMBL	tr\|M1BL12\|M1BL12_SOLTU	2E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047578}
TAIR10	AT3G07040.1	9E-83	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	14714198	14716210	-
GWHAAZE00000007	mRNA	14714198	14716210	-
GWHAAZE00000007	exon	14714198	14714747	-
GWHAAZE00000007	exon	14715042	14715247	-
GWHAAZE00000007	exon	14715341	14716210	-
GWHAAZE00000007	CDS	14715341	14716210	-
GWHAAZE00000007	CDS	14715042	14715247	-
GWHAAZE00000007	CDS	14714198	14714747	-

Transcript Sequence
>GWHTAAZE023604 ATGGGCTATAAACAACTCGCAGAGACTTTAGTCCAAGTTTTGCAGAAAAAGAGGTATGTTGTTGTTCTAGATGATGTGTGGACTGACAATATTTGGATGCAGATAAATGTTGCACTTCCTGATGGTAAAAATGGAAGTCGAGTCATAATATCAACTAGAAAGGAAGATGTAGCAATGTACCCATTTGGGGTTAGAAGCCATGTCCTCCACTCTCAGCCACTTACGGAGGATCAGGCTTGGACCCTCTTTTGCAACAAGACCTTTTCTAATGAACCTGAGAAAGCTTGTCCTCCAGATTTAGAAGATATAGCTAGGGACATGGTAAAGCGATGTGCAGGACTACCACTTGCAATTGTGGCTTTGGCGGGTCTTATGGCTTCTAAAGATAGGTCAGAATTGAAATGGAGGGCTGTTCATGACAGCATTGAATGGCATTGGACGGACAATCCTAGGCTTGAAGTAGTCAAAACGATTTTGTTTCTTAGTTTTCATGATTTACCATATTGCCTGAAAAAATGTTTTCTATATTGCTGTCGTTTCCCTGAAGGAGATTATTGGGTTGGAGGTGGTAGACTCATTAGATTGTGGGTGGCCGAAGGTTTTGTGGAAGAAAGAAAAGGTTTTACACCTGAGGAAGTTGGAAAAAGCTATCTCAAAGAACTCATTTCTCGAAGCTTGCTTCAAGTACGGAAGAGCAATACGTTGTTAGGTGCCAAACAATGCCGACTCCATGATCTTATGAGAGAGCTTGCGCTTTCCATATCAGACAAGGAGAATTTCAGTTCCATATATGACTTACAAGCTGGAATAGAAAATGAGAGAAGGCCACCGCTTATGCCTACTTCACCCTATAGATGGCTCCACACCAATGTTATTAAGGGTATTGAGTTGCGTGATGCACCAATAGATCATGTAACCACAACTATTGGGAAGTTATTCAACTTAAGATACTTGAACTTGAGTAGAACGCGTATAAAGGAGCTTCCAGAATCAATGTGGAGACTACGAAATTTACAGACGTTGGATATTAGGGAAACAAATATTGAAGAGCTTCCAAGTGGAATGCGAGGTTATGCACGCTCTACCACACTCATCCATTCCTCCGGTTCTTCGAAAGCTAACTTTAGTCGGAAGATTGAAAAGAGTGCCTTCTTGGTTTCCGCCACTTCTAATATAATTTATTTGCATTTGCATTGGAGCCAATTGGCGGAGGAAGACCCCATTCAGTACATAAATGGGTTGCCCAATTTAGAGCACCTCGCTCTGGTGAATGCATACGACCGTGGGAAGGTAAAATTGTGCTTCTACGAAGGGTTCCCTAAGCTTCAAGACTTGTTCCTTGTTATTTTTCGTGATTTGGGCGAAATAATAATTGCTACTGGAGTGATGCCAAGTCTTGTACGCATGAAGCTACATGTTTGTGGTGAACTGAAGAAGGTGCCTCGGGGAATTGAACACCTCACCAAGCTCGAAGAATTGGGCCTGAAAGATGTTTCAGATGAACTAATTGATAGCATTCGAGGGGAACAAAGTGTTGATTATGCCAAGGTAAAGCACATCCCAGCGATCAATCATTCTTACAAGATTAATGGAAGATATGAGTATGAAAGCTTGTCCCGGGCATAA

Network for GWHGAAZE023574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	5	164	1.80E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.371
	SRR3591706	second leaf	10.010
	SRR3591707	mature leaf	8.671
	SRR3591708	Shoot apex	5.046
	SRR3591709	Stem	0.826
	SRR3591710	White floral bud	5.146
	SRR3591711	White flower	3.947
	SRR3591712	Green floral bud	10.218
	SRR3591713	Yellow flower	1.800
SRP173429	SRR8316895	Juvenile bud stage	2.844
	SRR8316896	Juvenile bud stage	4.015
	SRR8316897	Juvenile bud stage	1.548
	SRR8316894	Third green stage	3.295
	SRR8316900	Third green stage	7.291
	SRR8316901	Third green stage	5.811
	SRR8316898	Complete white stage	2.069
	SRR8316899	Complete white stage	7.505
	SRR8316903	Complete white stage	3.258
	SRR8316902	Silver flowering stage	1.265
	SRR8316904	Silver flowering stage	2.093
	SRR8316905	Silver flowering stage	0.819
	SRR8316906	Gold flowering stage	1.691
	SRR8316907	Gold flowering stage	1.206
	SRR8316908	Gold flowering stage	2.049
SRP132670	SRR6706286	Control	3.448
	SRR6706287	Light intensity 50%	3.670
	SRR6706288	Light intensity 20%	4.214
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.294
	CNS0095593	Slightly white alabastrum(diploid) 2	5.078
	CNS0095594	Slightly white alabastrum(diploid) 3	2.903
	CNS0095595	Whole white alabastrum(diploid) 2	4.014
	CNS0095596	Whole white alabastrum(diploid) 3	3.642
	CNS0095597	Whole white alabastrum(diploid) 4	2.861
	CNS0095598	Silvery flower (diploied) 1	4.872
	CNS0095599	Silvery flower (diploied) 2	4.530
	CNS0095600	Silvery flower (diploied) 3	3.291
	CNS0095601	Golden flower (diploid) 1	2.901
	CNS0095602	Golden flower (diploid) 2	3.425
	CNS0095603	Golden flower (diploid) 3	3.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.992
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.623
	CNS0095610	Silvery flower (tetraploid) 1	2.988
	CNS0095611	Silvery flower (tetraploid) 2	3.271
	CNS0095612	Silvery flower (tetraploid) 3	2.556
	CNS0095613	Golden flower (tetraploid) 1	1.126
	CNS0095614	Golden flower (tetraploid) 2	2.294
	CNS0095615	Golden flower (tetraploid) 3	1.272
CRA001975	CRR073297	Stem 1	6.202
	CRR073298	Stem 2	7.021
	CRR073299	Stem 3	4.705
	CRR073300	Leaf 1	6.100
	CRR073301	Leaf 2	6.214
	CRR073302	Leaf 3	4.812
	CRR073303	Juvenile bud 1	4.205
	CRR073304	Juvenile bud 2	1.910
	CRR073305	Juvenile bud 3	2.853
	CRR073306	Third green 1	1.688
	CRR073307	Third green 2	1.339
	CRR073308	Third green 3	1.933
	CRR073309	Second white 1	0.764
	CRR073310	Second white 2	1.044
	CRR073311	Second white 3	0.663
	CRR073312	Silver flowering 1	0.493
	CRR073313	Silver flowering 2	0.593
	CRR073314	Silver flowering 3	0.500
	CRR073315	Gold flowering 1	1.475
	CRR073316	Gold flowering 2	3.996
	CRR073317	Gold flowering 3	3.492
	CRR073318	Tawny withering 1	0.909
	CRR073319	Tawny withering 2	0.750
	CRR073320	Tawny withering 3	0.462