Gene detail

Detail information of GWHGAAZE023575

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006361250.1	9.90167E-34	PREDICTED: disease resistance protein RPM1-like [Solanum tuberosum]
Swissprot	tr\|Q39214\|RPM1_ARATH	3E-13	Disease resistance protein RPM1
trEMBL	tr\|M1BL13\|M1BL13_SOLTU	4E-34	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047579}
TAIR10	AT3G07040.1	0.00000009	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	14849242	14851897	-
GWHAAZE00000007	mRNA	14849242	14851897	-
GWHAAZE00000007	exon	14849242	14849424	-
GWHAAZE00000007	exon	14849516	14849585	-
GWHAAZE00000007	exon	14849742	14849829	-
GWHAAZE00000007	exon	14850003	14850056	-
GWHAAZE00000007	exon	14850378	14850476	-
GWHAAZE00000007	exon	14851471	14851897	-
GWHAAZE00000007	CDS	14851471	14851897	-
GWHAAZE00000007	CDS	14850378	14850476	-
GWHAAZE00000007	CDS	14850003	14850056	-
GWHAAZE00000007	CDS	14849742	14849829	-
GWHAAZE00000007	CDS	14849516	14849585	-
GWHAAZE00000007	CDS	14849242	14849424	-

Transcript Sequence
>GWHTAAZE023605 ATGGAGATATTTGGTGTGGAGGTCACTTTACTGAGCATCAATTCTGTTCTCAAGAAGAAATTATTGATTGTTGGAATTCGCCACGAAATAAGAGATTTGAAGGTGGAGCTGGAGAGTATGAGATCTTTCCTTAGAGTTGCTAACAAGTGCAACAATGACCAAAATGAATCATACGATTTCTGGGTGGCACAAGTACAAGACGCGGCATATAAAGTTGAGGATGTGATCGACGAGTTCGTCTATCATATGGAAAACATAAGAGGAGGAGATGGACAGAGCTTCAAGGGTTTCTTCCACAGATTCCTTCGTCTCCCGAAAGAAATATACGTAAAGTTTTACACAACCATCAAACTAAAACGGATCAAAGCCGAGATCAAAGAGATTGCAAATAGAAGCAAGAGATATGATCTTGGTCATATAGACGAAGGTTCGAGCTCTGATCCCGGTCCCTGCTGGGTAGAAAATATCAAGGAATCATCTTTCTTTGTCGAGGAAAATGAAGTCGTGGGGAAGAAGAGAGAAAGAAGCGGCGTGTGGACTAACAATCTTTGGATGCAGATAAATATTGCACTTCCAGATGAAGATATAGCTAGGGACATAGTTAAGAAGTCGCGAAGGACTACCACTTGCAATTGTGGCTTTGGGAGGTCTTATGGCTTGAAAGATAGGAGATTCTGGGTTGGAAGTGGGAGACTCATTAGATTGTGGGTGGCGAAGGTTTTGTGGAAGAAAGAAGAGGAGCCAAGCGATCGACTCCACGATCTTATGAGAGAGCTTGCTCTTTCTATATCGGACAAGGATAATTTCAGTTCCATATATGACTTACAAGCTGGAATAGAAGATGAGAGAAGGCCACGCCGCTTATGCCTACTCCACCCTGTGGATGACAGCACACCAACGTTTGCCCCTAATATGTCACAG

Network for GWHGAAZE023575

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	15	85	3.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.706
	SRR3591706	second leaf	0.862
	SRR3591707	mature leaf	2.220
	SRR3591708	Shoot apex	0.986
	SRR3591709	Stem	0.950
	SRR3591710	White floral bud	0.101
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.102
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.017
	SRR8316896	Juvenile bud stage	0.021
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.021
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.003
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.013
	SRR6706287	Light intensity 50%	0.008
	SRR6706288	Light intensity 20%	0.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.024
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.028
	CRR073298	Stem 2	0.047
	CRR073299	Stem 3	0.016
	CRR073300	Leaf 1	0.026
	CRR073301	Leaf 2	0.023
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.100
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.007
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.022
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	0.397