Gene detail

Detail information of GWHGAAZE023576

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099195.1	2.05758E-59	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
COG	YP_004579826.1	6E-31	hypothetical protein
Swissprot	tr\|C0LGP4\|Y3475_ARATH	8E-37	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|F6HP05\|F6HP05_VITVI	9E-60	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56411.1}
TAIR10	AT3G47570.1	1E-30	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	15062577	15068243	+
GWHAAZE00000007	mRNA	15062577	15068243	+
GWHAAZE00000007	exon	15062577	15062970	+
GWHAAZE00000007	exon	15064590	15064955	+
GWHAAZE00000007	exon	15068131	15068243	+
GWHAAZE00000007	CDS	15062577	15062970	+
GWHAAZE00000007	CDS	15064590	15064955	+
GWHAAZE00000007	CDS	15068131	15068243	+

Transcript Sequence
>GWHTAAZE023606 ATGACGAGAAATTCTTTCATTTTCACGGTTTCATTGTTGTTGTTGCTAAATGGTTTCACATTTTGCTTATATACTAAGGATAAATTTGCACTTTTGGCAATCAAAACCAATATCGTTGACGATTCAGGCCTTTTATCAAACAATTGGTCCCCAACTTCCAACGCCTCAATCTGCACTTGGATTGGTGTTTCTTGTGATTTAAACAACCAATCTGTCATTGCCTTGAATCTCTCCGGCATGGGTCTCGCCGGCACTGTCACTCCGGTTATCGGAAACCTCTCGTCCCTCACTTCACTTGACATCAGTTACAATAACTTCTCTGGTTCTGTTCCTGAAGAGTTATTTCATTTGCATCATCTTCAATACTTGTTTTTATTCCACAACAGTTTCACAGGTACAATCCCAGCTTCGTTAGGCAACATTACAAAGCTTGAGATATTGAATTTAGGGTTCAATAAGCTTACAGGCTCTATACCGGCTGCAATATTCAACATTTCTTCATTGAGAGCAATTCACCTCTCAGCTAATAACTTATATGGTAGTCTTCCGGTGGATATTTGTAGTCAATATGTTCCTAATCTCAAAAGAATTTTTCTGTCCATGAATCACTTTGAGGGAAAAATTCCGCCGAGTTTATTCAAATGCAGGGAGCTTCAGCATCTGGAATTGTCAGCCAATGAATTTAGCGGCAGCATACCCATTGAAATTAGCAACTTGACTATGCTTAAGAACTTATGGCTTGGCGATAACAATTTGGAAGACCCTCCAGACCCAAAGCAAGTGGTCGCAGTTGTAGAGAAGCTAATGTCAGATGGAAAAAGTACAACAGAGAAAAGTGAATCTTCCTCGGCCAAGAAGAAGGAACTTGAATAA

Network for GWHGAAZE023576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	1.20E-07
PF13855.7	LRR_8	91	129	3.20E-07
PF00560.34	LRR_1	143	162	1.5

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.022
	SRR3591706	second leaf	5.047
	SRR3591707	mature leaf	14.615
	SRR3591708	Shoot apex	3.247
	SRR3591709	Stem	1.675
	SRR3591710	White floral bud	1.460
	SRR3591711	White flower	0.565
	SRR3591712	Green floral bud	1.732
	SRR3591713	Yellow flower	0.274
SRP173429	SRR8316895	Juvenile bud stage	1.491
	SRR8316896	Juvenile bud stage	1.550
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.919
	SRR8316900	Third green stage	3.764
	SRR8316901	Third green stage	3.605
	SRR8316898	Complete white stage	0.555
	SRR8316899	Complete white stage	9.324
	SRR8316903	Complete white stage	1.255
	SRR8316902	Silver flowering stage	0.162
	SRR8316904	Silver flowering stage	0.255
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.139
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	10.558
	SRR6706287	Light intensity 50%	10.951
	SRR6706288	Light intensity 20%	15.888
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.295
	CNS0095593	Slightly white alabastrum(diploid) 2	0.758
	CNS0095594	Slightly white alabastrum(diploid) 3	0.710
	CNS0095595	Whole white alabastrum(diploid) 2	0.702
	CNS0095596	Whole white alabastrum(diploid) 3	0.654
	CNS0095597	Whole white alabastrum(diploid) 4	0.756
	CNS0095598	Silvery flower (diploied) 1	0.196
	CNS0095599	Silvery flower (diploied) 2	0.996
	CNS0095600	Silvery flower (diploied) 3	0.094
	CNS0095601	Golden flower (diploid) 1	0.604
	CNS0095602	Golden flower (diploid) 2	0.184
	CNS0095603	Golden flower (diploid) 3	0.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.910
	CRR073298	Stem 2	1.876
	CRR073299	Stem 3	0.411
	CRR073300	Leaf 1	7.863
	CRR073301	Leaf 2	2.804
	CRR073302	Leaf 3	1.485
	CRR073303	Juvenile bud 1	3.670
	CRR073304	Juvenile bud 2	5.480
	CRR073305	Juvenile bud 3	1.043
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.269
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.131
	CRR073316	Gold flowering 2	0.631
	CRR073317	Gold flowering 3	0.081
	CRR073318	Tawny withering 1	0.307
	CRR073319	Tawny withering 2	0.485
	CRR073320	Tawny withering 3	0.796