Gene detail

Detail information of GWHGAAZE023585

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17827.1	0	unnamed protein product [Coffea canephora]
COG	YP_001660791.1	4E-14	apoptotic protease-activating factor 1 like
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A068VB70\|A0A068VB70_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_181 {ECO:0000313\|EMBL:CDP17827.1}
TAIR10	AT3G14470.1	2E-176	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	15510256	15514242	-
GWHAAZE00000007	mRNA	15510256	15514242	-
GWHAAZE00000007	exon	15510256	15514242	-
GWHAAZE00000007	CDS	15510256	15514242	-

Transcript Sequence
>GWHTAAZE023615 ATGTCAGTAGTAGAAATCTTTGTCTCGGCATTTGTTACTCTTCTGATCGAGAAGTTAGCCTCTTTCCTGCTGTTGAAAATGGCTGGCCTCGAGGGAATTGAGGCTCAACTCAAGAAGTGGAGCGACACTTTTAAGACTATTCGAGCTGTGCTAAATGACGCCGAGGAGAAACAGATCACAGATGAAGATGTACAGATGTGGCTCGACGATCTCCAACATTTGGCTTACGATCTTGACGACATACTCGACGATTTGCACACCAAAGCTTTGCATCGTGAAGCTGTGAAGGCAGCTCAAGAAGCTAGCACCAGTGAAGTAAGCCGCCTCATCCCTACTTTAACTACTTTTGCTAGTGATTTCATGTATGATTACAACATGGGATCCAAGTTAGCGGATATCACTCAAAGATTGCAAGATCTTTTGACCCGGAAAAAGGTTTTGGGGTTGACAAAGAATGCCATGGGGATCAAGTCATACGGAATCGGAGAAAGAGAAACCAGTTCCTTGGTGAATGAATCGGTTGTTTACGGCCGTGAAAATGATAAAAAGGAAGTAATCAAGTTGTTGTTGAGAACCGAAACACGTGCTGGTGAAGTCTCTGTAATTCCTATAGTTGGTATGGGCGGTGTCGGGAAAACCACTCTTGCTCAACTTGTTTACAATGATGATGAAGTACAGGGCCAGTTTGATCTCAAGATATGGGTATGTGTTTCTGATGAATTTGATGTCTTCCTGATAACCAAGCGAATTCTTGGGGCTAAGGCCTTGGACTTAAACAAGGCTCAAGAGAAACTAAAGAAGAAACTTTCCAACAGAAAATTTCTTATTGTTTTAGACGACGTATGGAACGAAGACTACGGAAAATGGGATCAACTCCGTACTCCTTTTCTGGCTGGGGCACCTGGCAGTGTAGTTATTGTTACAACTCGGAACGAGAAGGTGGCGTCAACAATGGGCAAGGTTCGAGGCAATGATCAAATTTATCGTCTAGACAAGCTTTCAGATGATATTTGCCTATCTATATTAGCTCGACATGCATTATCTACAAGAGATTTTGAAGAGAATACCAACTTTAAAATCGTCGCCGCGAAACTTGCCAGAAAGTGTAAAGGCTTACCCTTGGCAGCAAAGGCGATTGGAGGCCTCTTGCGCACAAGTGGAACACCAAATGAGTGGGAAGATATATTAAACAGCAAGATTTGGGAATTGCCAGAACAATCGACTGGCATTCTTCCAGCTTTGAGATTAAGCTATCGGCATCTACCTCCTCATCTAAAGCGTTTGTTTGCGTATTGCTCTATATTTCCGGCGGACTATATCTTTGACAAATACGAGCTAGTTTTGTTATGGATGGCAGAAGGCTTTTTGCAGCAGTCAGAAGGAAAGAAGAGAATGGAAGAGATGGGTTTTCTATATTTCAATGAGCTTGTATCGCGGTCCTTTTTTCAACCTTTAAGCGGCAGCGAGGAATCGCTGTTTGTGATGCATGACCTAATGAATGACCTAGCTCAGTTTGTTGCCAAAGGAATATGCTATAGGGTGGAAGATGAAATGAAGTTCAATGGACAACATATTGGTTTTGAAAAGGTTCGCCACTCATCATACATTCGCCAGAAATATGGTGTCTTTAATAAATTCGAGAACTATCGCAAACTTCTTAGTTTGCGGACTTTCTTACCTCTATTGGTTCATAAAGTGGAAAATTGGCAGAAGTTCTACTTGAGCAGTAGGGTTGTTAATGAGTTGTTACCTGAACTCTGGTGCTTACGGGTTCTGTCTTTGAGTGGTTATTCCATAACCGAGCTTTCAAACTCAATTGGTGAGTTGAAACACCTTCGGTATCTTAACTTATCCCAGACCCTCATCACACATTTGCCCGAGTCCGTGAGTGATCTCTACAATTTACAGACGTTATCATTATGTAATTGCAGCGAACTACTCAAGTTACCGACAAGAATTGGAGGCTTAGTTAATTTGCGGCATCTTGACATCGGCAAAACTAAAAAATTATTAAAAATGCCTTCTTGGATTGGTAAGTTAACTAGTTTGCAGACATTGTCAAAGATTATTCTAGATGAGAATCATACTTTGGTGGTAAATGAGTTGAGGGGATTATCTGATCTCCGGGGAACACTTGCCATTATTGGGTTACACAATGTGATGAATGTTGAAGATGCAAGGGAAGCCAATCTTTTGTCTAAGCAAGGCCTCAAGGACTTGACATTGACCTGGAGCAGCGATTTTGATGATTCTCAAAGAACGGAGACTCGAGAGTACGAAGTGCTTGAATTTCTAAAACCTTATACAAAATTGACAAAGTTGAAAATCGAGTTCTATGGGGGCATTGAATTTCCTAGTTGGGTATGTGATCCTTCGTTCGTTGATATAACAAATCTAACCTTCAGTGGGTGTGAAAGGGTTGCATCCTTACCATCACTTGGGCGTCTACCCTCACTCAAGGAGTTGTTCATCCAAGGCATGGCTGGCGTGAAAAATGTGGGCGACGAGTTGTACGGAGTTGGTCAGGTGGTTGCATTCCAGTCACTTGAAACTCTCAAGTTTGAGAACATGGTGGGTTGGGAGGAATGGTCTTTCAATTTGGCCAATATTAATGACCGTGTTGGTGCGTTTCCTCGACTTCTCAACCTTACGATACGTGATTGTCCTGTATTGGTCAAGATTTCACTTCCCAATCTTCCGTCACTTCGGGTTTTAGATATAAGAAGATGTGATGAGGTTGTTCTTAGTGGTATAGTTAGTGTCGCATCTCTTACTACCATAACGATGGAAGGGATCCTTGGGCTTTCGAAGCTGAACGAAGGGGTTGTACGATCTCTGGGAGAACTTCAATATCTTCGAATTCTAAATTGTGATGAGCTGCGGTATTTGTGGGAAGAAGAAGAATCCTCGTGTTACAAGCTCGGAAATCTGGTTGATCTATGTTTTGGAGGGTGCCTTAAGCTTGAGAAGTTGCCAGATCTTGGGAGTTGCCTCACGTCTCTCAAGAAATTAGACATCCAACATTGCCCGAGACTGCAGTCCTTGCAAACAACGAAAAATTTGCCAGGGAAAGAAAAAGAGTTGATCGAAAGCAATAGCAACAATCATGTGGAAAGTTGTTCTCATCTTGAAAGTTTATCTATTTGGGGTTGTGAATCTTTGACATGCTTTCTACCATGTCATAATCTACCCACCACCCTCAAATATCTTTCCGTTTATTCTTGCAGTAATTTGGAGCCAGATTCAGAGAACTTTTGGTTACTCAACAGTAGTAGTATGCCATCATCACTTGAAACAATTCATATCTGCAATTGGGTGAAGCTGGCATCCTTACCTCGTTGCTTGTTCAAATTCATTCACTTTACCAATTTATCGTTAAATGGCTGTCCAGGTCTCGAGTCATTTCCGGAAAGAGGTTTGCCTCCCAACTTGAGAATACTTACTATAATGAAGTGCGAGAATCTGAAATATTTGCCTGATGATCAGATGCAAAGCCTCACGTCTCTGGTAAGTGTTGAAGTATCGGGCTGTCCATGTCTCGAATCCTTTCCTCAAGGGCGTTGGCCTCCCAACCTAGAATCACTTCAGATCGGCAACATAAAGAAGCAGCCCATCTCAAAGTGGAGCCTACATAGTCTCCCAACCTCTCTTGTTTATTTGAAAATTGACGGTGATATTCCAGGGCTGATGTCACTTTCGGGTGCGGGTATTAAACTTCCAACAACTCTAACCACACTTACTATCAATAATCTCCAGAGTATTGAATCCCTCTCCATGGGCCTCGAGAACCTCACCTCGCTTCAAAACCTCTGCATATTTAAATGTCCTAAGCTTCAATCTTTGCCAGATACGTTGCTTCCAGCACTTTCAAGTCTTAAAATCCAGAAGTGCCCACTCGTAAAAGAACGGTGTTTAAAGGAGAAAAGAGATTATTGGCCCAAAATATCCCACATCCCTTGTGTGTGGATAGACAGCAAATTAATCTAG

Network for GWHGAAZE023585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0247

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	11	99	3.10E-24
PF00931.23	NB-ARC	179	397	2.90E-46

Protein Sequence

>GWHPAAZE023601
MSVVEIFVSAFVTLLIEKLASFLLLKMAGLEGIEAQLKKWSDTFKTIRAVLNDAEEKQITDEDVQMWLDDLQHLAYDLDDILDDLHTKALHREAVKAAQEASTSEVSRLIPTLTTFASDFMYDYNMGSKLADITQRLQDLLTRKKVLGLTKNAMGIKSYGIGERETSSLVNESVVYGRENDKKEVIKLLLRTETRAGEVSVIPIVGMGGVGKTTLAQLVYNDDEVQGQFDLKIWVCVSDEFDVFLITKRILGAKALDLNKAQEKLKKKLSNRKFLIVLDDVWNEDYGKWDQLRTPFLAGAPGSVVIVTTRNEKVASTMGKVRGNDQIYRLDKLSDDICLSILARHALSTRDFEENTNFKIVAAKLARKCKGLPLAAKAIGGLLRTSGTPNEWEDILNSKIWELPEQSTGILPALRLSYRHLPPHLKRLFAYCSIFPADYIFDKYELVLLWMAEGFLQQSEGKKRMEEMGFLYFNELVSRSFFQPLSGSEESLFVMHDLMNDLAQFVAKGICYRVEDEMKFNGQHIGFEKVRHSSYIRQKYGVFNKFENYRKLLSLRTFLPLLVHKVENWQKFYLSSRVVNELLPELWCLRVLSLSGYSITELSNSIGELKHLRYLNLSQTLITHLPESVSDLYNLQTLSLCNCSELLKLPTRIGGLVNLRHLDIGKTKKLLKMPSWIGKLTSLQTLSKIILDENHTLVVNELRGLSDLRGTLAIIGLHNVMNVEDAREANLLSKQGLKDLTLTWSSDFDDSQRTETREYEVLEFLKPYTKLTKLKIEFYGGIEFPSWVCDPSFVDITNLTFSGCERVASLPSLGRLPSLKELFIQGMAGVKNVGDELYGVGQVVAFQSLETLKFENMVGWEEWSFNLANINDRVGAFPRLLNLTIRDCPVLVKISLPNLPSLRVLDIRRCDEVVLSGIVSVASLTTITMEGILGLSKLNEGVVRSLGELQYLRILNCDELRYLWEEEESSCYKLGNLVDLCFGGCLKLEKLPDLGSCLTSLKKLDIQHCPRLQSLQTTKNLPGKEKELIESNSNNHVESCSHLESLSIWGCESLTCFLPCHNLPTTLKYLSVYSCSNLEPDSENFWLLNSSSMPSSLETIHICNWVKLASLPRCLFKFIHFTNLSLNGCPGLESFPERGLPPNLRILTIMKCENLKYLPDDQMQSLTSLVSVEVSGCPCLESFPQGRWPPNLESLQIGNIKKQPISKWSLHSLPTSLVYLKIDGDIPGLMSLSGAGIKLPTTLTTLTINNLQSIESLSMGLENLTSLQNLCIFKCPKLQSLPDTLLPALSSLKIQKCPLVKERCLKEKRDYWPKISHIPCVWIDSKLI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.391
	SRR3591706	second leaf	4.819
	SRR3591707	mature leaf	4.642
	SRR3591708	Shoot apex	6.578
	SRR3591709	Stem	5.932
	SRR3591710	White floral bud	3.952
	SRR3591711	White flower	2.882
	SRR3591712	Green floral bud	3.234
	SRR3591713	Yellow flower	1.968
SRP173429	SRR8316895	Juvenile bud stage	1.639
	SRR8316896	Juvenile bud stage	2.152
	SRR8316897	Juvenile bud stage	1.415
	SRR8316894	Third green stage	0.827
	SRR8316900	Third green stage	1.401
	SRR8316901	Third green stage	0.988
	SRR8316898	Complete white stage	0.347
	SRR8316899	Complete white stage	1.303
	SRR8316903	Complete white stage	1.461
	SRR8316902	Silver flowering stage	0.507
	SRR8316904	Silver flowering stage	0.809
	SRR8316905	Silver flowering stage	0.308
	SRR8316906	Gold flowering stage	1.435
	SRR8316907	Gold flowering stage	0.776
	SRR8316908	Gold flowering stage	2.271
SRP132670	SRR6706286	Control	1.104
	SRR6706287	Light intensity 50%	0.742
	SRR6706288	Light intensity 20%	0.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.007
	CNS0095593	Slightly white alabastrum(diploid) 2	1.265
	CNS0095594	Slightly white alabastrum(diploid) 3	0.621
	CNS0095595	Whole white alabastrum(diploid) 2	1.013
	CNS0095596	Whole white alabastrum(diploid) 3	0.443
	CNS0095597	Whole white alabastrum(diploid) 4	0.609
	CNS0095598	Silvery flower (diploied) 1	2.627
	CNS0095599	Silvery flower (diploied) 2	2.525
	CNS0095600	Silvery flower (diploied) 3	1.895
	CNS0095601	Golden flower (diploid) 1	2.348
	CNS0095602	Golden flower (diploid) 2	2.872
	CNS0095603	Golden flower (diploid) 3	2.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.611
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.657
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.717
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.055
	CNS0095610	Silvery flower (tetraploid) 1	1.176
	CNS0095611	Silvery flower (tetraploid) 2	2.494
	CNS0095612	Silvery flower (tetraploid) 3	2.556
	CNS0095613	Golden flower (tetraploid) 1	1.211
	CNS0095614	Golden flower (tetraploid) 2	0.765
	CNS0095615	Golden flower (tetraploid) 3	1.518
CRA001975	CRR073297	Stem 1	2.766
	CRR073298	Stem 2	2.877
	CRR073299	Stem 3	1.687
	CRR073300	Leaf 1	2.546
	CRR073301	Leaf 2	1.938
	CRR073302	Leaf 3	1.205
	CRR073303	Juvenile bud 1	1.096
	CRR073304	Juvenile bud 2	0.746
	CRR073305	Juvenile bud 3	1.217
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.011
	CRR073308	Third green 3	0.060
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.091
	CRR073313	Silver flowering 2	0.013
	CRR073314	Silver flowering 3	0.118
	CRR073315	Gold flowering 1	2.094
	CRR073316	Gold flowering 2	3.054
	CRR073317	Gold flowering 3	2.404
	CRR073318	Tawny withering 1	1.796
	CRR073319	Tawny withering 2	1.942
	CRR073320	Tawny withering 3	2.700