Detail information of GWHGAAZE023588


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004244420.11.28566E-53PREDICTED: disease resistance protein RPM1-like [Solanum lycopersicum]
Swissprottr|Q39214|RPM1_ARATH9E-36Disease resistance protein RPM1
trEMBLtr|M1BL11|M1BL11_SOLTU6E-53Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400047577}
TAIR10AT3G07040.13E-32NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1581376215814373-
GWHAAZE00000007mRNA1581376215814373-
GWHAAZE00000007exon1581376215814373-
GWHAAZE00000007CDS1581376215814373-
Transcript Sequence

Network for GWHGAAZE023588

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13457RPM1, RPS3 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.541
SRR3591706second leaf13.081
SRR3591707mature leaf14.398
SRR3591708Shoot apex7.028
SRR3591709Stem0.954
SRR3591710White floral bud7.017
SRR3591711White flower4.310
SRR3591712Green floral bud12.791
SRR3591713Yellow flower2.266
SRP173429 SRR8316895Juvenile bud stage 7.798
SRR8316896Juvenile bud stage 10.204
SRR8316897Juvenile bud stage 8.371
SRR8316894Third green stage 7.545
SRR8316900Third green stage 18.689
SRR8316901Third green stage 14.331
SRR8316898Complete white stage 4.120
SRR8316899Complete white stage 18.878
SRR8316903Complete white stage 8.280
SRR8316902Silver flowering stage4.310
SRR8316904Silver flowering stage7.102
SRR8316905Silver flowering stage3.186
SRR8316906Gold flowering stage 7.041
SRR8316907Gold flowering stage 4.999
SRR8316908Gold flowering stage 11.632
SRP132670SRR6706286Control9.722
SRR6706287Light intensity 50%10.816
SRR6706288Light intensity 20%12.565
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.385
CNS0095593Slightly white alabastrum(diploid) 227.252
CNS0095594Slightly white alabastrum(diploid) 39.265
CNS0095595Whole white alabastrum(diploid) 215.080
CNS0095596Whole white alabastrum(diploid) 315.397
CNS0095597Whole white alabastrum(diploid) 412.238
CNS0095598Silvery flower (diploied) 115.204
CNS0095599Silvery flower (diploied) 212.927
CNS0095600Silvery flower (diploied) 311.243
CNS0095601Golden flower (diploid) 16.809
CNS0095602Golden flower (diploid) 27.370
CNS0095603Golden flower (diploid) 36.971
CNS0095604Slightly white alabastrum(tetraploid) 117.504
CNS0095605Slightly white alabastrum(tetraploid) 217.510
CNS0095606Slightly white alabastrum(tetraploid) 322.880
CNS0095607Whole white alabastrum(tetraploid) 110.064
CNS0095608Whole white alabastrum(tetraploid) 28.706
CNS0095609Whole white alabastrum(tetraploid) 314.058
CNS0095610Silvery flower (tetraploid) 19.656
CNS0095611Silvery flower (tetraploid) 210.062
CNS0095612Silvery flower (tetraploid) 39.115
CNS0095613Golden flower (tetraploid) 13.297
CNS0095614Golden flower (tetraploid) 26.151
CNS0095615Golden flower (tetraploid) 33.083
CRA001975CRR073297Stem 126.111
CRR073298Stem 221.843
CRR073299Stem 320.790
CRR073300Leaf 126.968
CRR073301Leaf 223.058
CRR073302Leaf 320.734
CRR073303Juvenile bud 114.105
CRR073304Juvenile bud 27.371
CRR073305Juvenile bud 313.669
CRR073306Third green 16.661
CRR073307Third green 27.218
CRR073308Third green 39.753
CRR073309Second white 15.456
CRR073310Second white 27.328
CRR073311Second white 32.926
CRR073312Silver flowering 11.539
CRR073313Silver flowering 21.522
CRR073314Silver flowering 32.974
CRR073315Gold flowering 112.476
CRR073316Gold flowering 220.838
CRR073317Gold flowering 315.972
CRR073318Tawny withering 13.157
CRR073319Tawny withering 24.526
CRR073320Tawny withering 31.487