Gene detail

Detail information of GWHGAAZE023598

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006432626.1	3.1096E-105	hypothetical protein CICLE_v10001909mg [Citrus clementina]
Swissprot	tr\|B5KRH5\|PILR1_LINCY	5E-105	Bifunctional pinoresinol-lariciresinol reductase
trEMBL	tr\|A0A067F5R8\|A0A067F5R8_CITSI	1E-105	Uncharacterized protein {ECO:0000313\|EMBL:KDO58832.1}
TAIR10	AT1G32100.1	2E-54	pinoresinol reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	16274643	16286696	-
GWHAAZE00000007	mRNA	16274643	16286696	-
GWHAAZE00000007	exon	16286511	16286696	-
GWHAAZE00000007	exon	16286040	16286282	-
GWHAAZE00000007	exon	16278119	16278215	-
GWHAAZE00000007	exon	16277485	16277700	-
GWHAAZE00000007	exon	16274643	16274806	-
GWHAAZE00000007	CDS	16286511	16286696	-
GWHAAZE00000007	CDS	16286040	16286282	-
GWHAAZE00000007	CDS	16278119	16278215	-
GWHAAZE00000007	CDS	16277485	16277700	-
GWHAAZE00000007	CDS	16274643	16274806	-

Transcript Sequence
>GWHTAAZE023628 ATGTTGTTAAATTTCAAGGCACAAGGGGCTCATCTTGTGAAAGGTTCTTTCAATGATTATGGGAGTTTAGTGGAGGCAGTGAAATTGGTGGATGTTGTTATTTGTGCTATTTCAGGTGTTCATCTACGTAGCCATCATATTTTGCTTCAGCTTAAGCTTGTGGATGCCATCAAAGAGGCTGGAAATAGGTTTTTGCCATCGGAGTTTGGGACGGATCCGGCAAGAATGGGGGATGCAATGGAACCAGGAAGAGTGTCATTTGATGACAAAATGGTGGTGAGGAAAGCGATTGAAAAGGCTGGAATTCCTTTTACCTACGTCTCCGCCAACTGCTTTGCCGGTTACTTCCTTGGCGGCTTGTGTCAGCCAGTTAAACAATTAATTCCTTCAACAGATTCTGTTGCTTTATTGGTGATGGCAATCAAAAAGGCACAAGGAGCACACCTTGTGAAAGGTTCTTTCAATGATTATGGGAGTTTAGTGGAGGCAGTGAAATTGGTGGATGTGGTTATTTGTGCTATTTCAGATCCTGCAAGAATGGAGAATGCAATGGAACCAGGGAGAGTGACATTTGATGACAAAATGGTGGTGAGGAAAGCAATTGAAAAGGCTGGAATTCCTTTCACTTACATCTCTGCCAACTGCTTCGCCGGTTACTTCCTTGGCGGCCTGTGTCAGCCAGCTAAACAATTAATTCCTTCTACTGATTCTGTAGTCTTATTGGGTGATGGCAATAAAAAAGAACAAGATTATGCAGAGCAAGTTGGATTAACACATTACTACCATGTATGCTACGAAGGATGCCTTGTTAATTTTGAAATTGGATCTGAGGGAGAAGAGGCAACCAAACTCTACCCAGAAATTAAATACACAAATGTTGAAGAATTCCTCAAACGATACATTTGA

Network for GWHGAAZE023598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05368.14	NmrA	4	137	2.90E-30
PF05368.14	NmrA	180	249	9.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21568	PLR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of various secondary metabolites - part 2	map00998

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.417
	SRR3591706	second leaf	3.039
	SRR3591707	mature leaf	0.539
	SRR3591708	Shoot apex	3.016
	SRR3591709	Stem	46.179
	SRR3591710	White floral bud	1.550
	SRR3591711	White flower	4.534
	SRR3591712	Green floral bud	1.742
	SRR3591713	Yellow flower	18.090
SRP173429	SRR8316895	Juvenile bud stage	1.707
	SRR8316896	Juvenile bud stage	2.631
	SRR8316897	Juvenile bud stage	0.719
	SRR8316894	Third green stage	0.923
	SRR8316900	Third green stage	3.515
	SRR8316901	Third green stage	3.371
	SRR8316898	Complete white stage	0.423
	SRR8316899	Complete white stage	0.958
	SRR8316903	Complete white stage	0.508
	SRR8316902	Silver flowering stage	0.474
	SRR8316904	Silver flowering stage	0.380
	SRR8316905	Silver flowering stage	0.125
	SRR8316906	Gold flowering stage	2.776
	SRR8316907	Gold flowering stage	1.601
	SRR8316908	Gold flowering stage	0.502
SRP132670	SRR6706286	Control	2.485
	SRR6706287	Light intensity 50%	1.750
	SRR6706288	Light intensity 20%	2.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.498
	CNS0095593	Slightly white alabastrum(diploid) 2	0.605
	CNS0095594	Slightly white alabastrum(diploid) 3	2.045
	CNS0095595	Whole white alabastrum(diploid) 2	1.760
	CNS0095596	Whole white alabastrum(diploid) 3	0.803
	CNS0095597	Whole white alabastrum(diploid) 4	0.836
	CNS0095598	Silvery flower (diploied) 1	1.174
	CNS0095599	Silvery flower (diploied) 2	1.376
	CNS0095600	Silvery flower (diploied) 3	0.599
	CNS0095601	Golden flower (diploid) 1	0.418
	CNS0095602	Golden flower (diploid) 2	1.174
	CNS0095603	Golden flower (diploid) 3	1.108
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.938
	CNS0095610	Silvery flower (tetraploid) 1	1.215
	CNS0095611	Silvery flower (tetraploid) 2	0.941
	CNS0095612	Silvery flower (tetraploid) 3	2.069
	CNS0095613	Golden flower (tetraploid) 1	3.146
	CNS0095614	Golden flower (tetraploid) 2	1.456
	CNS0095615	Golden flower (tetraploid) 3	6.841
CRA001975	CRR073297	Stem 1	3.754
	CRR073298	Stem 2	1.600
	CRR073299	Stem 3	0.903
	CRR073300	Leaf 1	1.211
	CRR073301	Leaf 2	1.668
	CRR073302	Leaf 3	0.934
	CRR073303	Juvenile bud 1	0.262
	CRR073304	Juvenile bud 2	0.430
	CRR073305	Juvenile bud 3	0.312
	CRR073306	Third green 1	0.398
	CRR073307	Third green 2	0.178
	CRR073308	Third green 3	0.293
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	1.000
	CRR073311	Second white 3	0.363
	CRR073312	Silver flowering 1	1.968
	CRR073313	Silver flowering 2	1.601
	CRR073314	Silver flowering 3	3.066
	CRR073315	Gold flowering 1	0.198
	CRR073316	Gold flowering 2	0.051
	CRR073317	Gold flowering 3	0.301
	CRR073318	Tawny withering 1	15.842
	CRR073319	Tawny withering 2	23.206
	CRR073320	Tawny withering 3	9.721