Gene detail

Detail information of GWHGAAZE023624

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAA18628.1	1.58398E-45	putative pectinacetylesterase protein [Arabidopsis thaliana]
trEMBL	tr\|O65712\|O65712_ARATH	6E-46	Putative pectinacetylesterase protein {ECO:0000313\|EMBL:CAA18628.1}
TAIR10	AT4G19420.2	5E-29	Pectinacetylesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	18525301	18527947	+
GWHAAZE00000007	mRNA	18525301	18527947	+
GWHAAZE00000007	exon	18525301	18525381	+
GWHAAZE00000007	exon	18525464	18525551	+
GWHAAZE00000007	exon	18526051	18526174	+
GWHAAZE00000007	exon	18526293	18526356	+
GWHAAZE00000007	exon	18526471	18526524	+
GWHAAZE00000007	exon	18526821	18526929	+
GWHAAZE00000007	exon	18527567	18527715	+
GWHAAZE00000007	exon	18527816	18527947	+
GWHAAZE00000007	CDS	18525301	18525381	+
GWHAAZE00000007	CDS	18525464	18525551	+
GWHAAZE00000007	CDS	18526051	18526174	+
GWHAAZE00000007	CDS	18526293	18526356	+
GWHAAZE00000007	CDS	18526471	18526524	+
GWHAAZE00000007	CDS	18526821	18526929	+
GWHAAZE00000007	CDS	18527567	18527715	+
GWHAAZE00000007	CDS	18527816	18527917	+
GWHAAZE00000007	three_prime_UTR	18527918	18527947	+

Transcript Sequence
>GWHTAAZE023654 TGTCTTGATGGAAGTCCACCAGCGTACCATTTTGACAAGGGAAATGGAGAAGGAATCAACAATTGGTTGGTTCACTTAGAGGGTGGTGGATGGTGCGACTCACTTGATAGTTGCTCCAAGCGCGCAAAAGACCCAAAACTTGGGTCTTCCAATAACATGCGAAGTCAAGGCTCTTCTCTCCGGATGCTCAGCTGGTGGTTTGGCAGCCATACTCCACTGCGAGAATTCCGAGCTTTGCTGGCCACCAAAGCTAGAGTAAAATGCCTTTCAGACGGTGGTTACTTTCTCCATGCGAAAGATTTCTATGGAGGATACCACTTCGAATATGCAAAATTTGATAAAGTTGTTGGCGTGCATGGGTCAGCAAAGAATTTGCCACAGACTTGTACTGGAAAGATTAAACCGAGTTTGCTTGAGTACATTTTTGCACTGACGTACCTACCTAGAGTTGGCCGTTCGTGGTTGAAATGCCCAAATAACACAATGTACTGCTCATCCAGCCAAATCAAGAGATTGGAAGGTTTGCAGTCAGAATTCGTGAACACAATTTTAACGAGGTTGGGTAGCCGCCCTTCCTCTAGAGGCTGGTTCATCGATTCTTGCTATACTCATTGCCAATCTTTGTTTGGGCCCAGTTGGCTTGGACCTAATGTGACACTGAATGACAAAACAATTTCTGAGGCGGTTGGGGATTGGTTTTACGACAGACGTCTTGTGCACTTGGTAGATCACAAACATAAATTACCACATTCGTGTGTACGTGAGAAATGAAAACCGATCCTAACAATAGCTATATCTGGG

Network for GWHGAAZE023624

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03283.14	PAE	1	63	6.90E-22
PF03283.14	PAE	73	142	2.30E-11
PF03283.14	PAE	151	237	1.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.013
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.781
	SRR3591711	White flower	0.860
	SRR3591712	Green floral bud	1.155
	SRR3591713	Yellow flower	0.334
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.008
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.003
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.017
	SRR6706288	Light intensity 20%	0.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.141
	CNS0095595	Whole white alabastrum(diploid) 2	0.054
	CNS0095596	Whole white alabastrum(diploid) 3	0.048
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.099
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.018
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.060
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.169
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.027
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000