Gene detail

Detail information of GWHGAAZE023671

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268049.1	0	nitrate reductase [NADH]-like [Vitis vinifera]
COG	YP_001545630.1	2E-54	sulfite oxidase
Swissprot	tr\|P08509\|NIA2_TOBAC	0	Nitrate reductase [NADH] 2
trEMBL	tr\|F6H0M5\|F6H0M5_VITVI	0	Nitrate reductase {ECO:0000256\|PIRNR:PIRNR000233}
TAIR10	AT1G37130.1	0	nitrate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	21581744	21589781	-
GWHAAZE00000007	mRNA	21581744	21589781	-
GWHAAZE00000007	exon	21581744	21582424	-
GWHAAZE00000007	exon	21583481	21584023	-
GWHAAZE00000007	exon	21586775	21587007	-
GWHAAZE00000007	exon	21587876	21588010	-
GWHAAZE00000007	exon	21588707	21589781	-
GWHAAZE00000007	CDS	21588707	21589781	-
GWHAAZE00000007	CDS	21587876	21588010	-
GWHAAZE00000007	CDS	21586775	21587007	-
GWHAAZE00000007	CDS	21583481	21584023	-
GWHAAZE00000007	CDS	21581744	21582424	-

Transcript Sequence
>GWHTAAZE023701 ATGAGCAACCAACAGTCGAAGGACCCTACTCAGGCGGTGGAATCACCGGAAGAAACTCAAACTTCTTTTCCTTCATTGGAGGGCGGTCCTTCTCAGGCGGTGGAATCACCGGAAGAAACTCAAACTTCTTCTCCTTCATTGGAGGGCGGTCCTTCTCAGGCGATGGAAACACCGGAAGAAACTCAAACTTCTTCTCCTTCATTGGAGGGCAAAGATCTATTAGGCATCTACGACGATGAAAACAATAAAAATGAAAATTATTACAGAGATGCTGTTGAAAAGGCGAAAGCAGAAGGACCGTCAGAGAAAGATTCAAGGGATCAATCAACGCCCGACAGCTGGATCAAACGGAATTCATTAATGGTCCGACTAACAGGTAATCACCCGTTCAATTCTGAGCCACCGCTGGATAAACTAATGGACCATGGCTTCATAACCCCGGTGCCTTTACACTACGTCCGTAACCACGGTCAAGTCCCTCGGGCCGATTGGTCGACCTGGACCGTGGAAGTTTGCGGAAAGGTAAAGAAATCCAAAAAATTTACCATGGAAGAACTCATAAAGAAGTTCCCCAGTAAAGTGTTCCCAGCAACATTAGTTTGTGCCGGGAACAGAAGGAAAGAACAAAAGATGGTCAAGAAAACCAAGGGGTTCAATTGGGGGGCCGCCGGAATTTCCACGTCGATGTGGAAAGGCGTGCCCTTACACCTCGTGCTAGACCATTGTGAGGTTTATAGCAAAGAAGAAAAAGCATTTAACGTGTGTTTTGAAGGCGCAGAAAATTTGGCTAGAGGGGGTGGGAGCCGTGGGGCAAAGTATGGGACGAGTATAAAGATAGAATTTGCGATGGATCCGGGGAGGGATATTATAATTGCATATATGCAGAACGGGGAGATACTAGCCGAGGATCATGGTTTTCCGGTGAGGATGATAATTCCCGGATTCATCGGAGGGAGGATGGTGAAATGGTTGAAGAGGATAATTGTAACAGAAAAAGAATCGAATAGTTATTATCATTTCAAGGATAATAGAGTGTTTCCTTCCCACGTTGATTTGAATCTAGCCAACTCCGAAGCTTGGTGGTACAAGCCAGAGTACATAATCAACGAGTTGAACATAAACTCGGTTATTACTACGCCGAGTCACGAGATGACCTTGCCGATTAATTCGTTAACCAAGAAGGAAACGCTGAGGGGCTATGCTTATTCAGGTGGTGGGAAGAAAGTGACACGTGTGGAGGTAACAATGGATGGAGGGGAGATGTGGCACGTGTGCAATGTGGACCACCGAGAGAAGCCGAACGAGTACGGCAAATACTGGTGCTGGTGCTTCTGGTCACTTGAAGTTGAGGTTTTGGACCTATTTCGTGCCAACGAGATTGCTGTTCGAGCCTGGGACGAAACCCTCAACACACAACCAGAGAAACTCATTTGGAACCTTATGGGCATGATGAACAATTGCTGGTTTCGGGTTAAAATTAGGGAATGCGTGACGGACAATGGCGAAAAGGGGCTCATATTCGAACACCCGACGCAACCCAGTAACCAATCGGGTGGGTGGATGGTTCGTGAGAAGCACCTCAAGTCCTCGGCCGATTCGACACCATTCAAGAACACCTCCTCCAAGGTTTACTCGGTCTCTGATTTGGAAAGGCACAACTTGCCTCACTCGGCTTGGATCGCGGTCCATGGCCATGTATATGACTGCACGCCGTTCCTCAAACGCCACCCTGGAGGGGAAGACAGTATCCTCGTCAACGCAGGGACTGATTGCACTGAGGTCTTTGATGAAATTCACTCCGATTACGCTTACAATTTACTTGAGAATTACCGGATCGGAGAGTTGATAACTAGCGGTTGCATTTCTGCTCTGGCAAGAAATATAGCGCTTGTACCTCAAGAAAAAGTCCCTTGTATGTTGGTGGAAAAGACTTCACTTTCACATGATGTGAGACGCTTTCGATTCTCATTGCCATTAAAAGATCAGGTGCTAGGATTACCTGTTGGGAAGCATATAATTTTGTGCGCAACCATTAATGGCGAGCCATGTATGCGGGAGTATACACCTATAAGTAGCGTTGATGAAGTGGGGTTCTTTGATTTATTAGTAAAGATATATTTCAAAAACGAAGAATTTCCTAATGGCGGCCTAATGTCAAATTACCTGGACACACTCCCGCTAGAATCTTCAATAGATGTGAAGGGTCCGGTAGGGCACATTGAATACAAAGGGAAGGGAAAATTTATGGTATATGGTGAACAAAAGTCTGCCAAGAAGCTGGCCATGATTGCTGGAGGGACGGGCATTACGCCTATTTATCAAGTTATGCAAGCGATATTGAAGGATCCCGAAGATGACACTGAGATGAATGTCGTGTACGCGAATCATACCGAAGACGATATATTGATGAAGGAGGAGCTTGATAAGTGGGCTAATGAGTTCCATGACAGAGTGAAGGTGTGGTATGTTGTTGGGGAAACGAAAAAGGAGGGATGGAAATACAGCGTGGGAAGGATTGATGAGGGTATTATGAGGAAGCACCTCCCCGAGGCATCGGTTGACGTTCTAGCACTAGTGTGTGGACCGCCGCCGATGATTGAATCTGCTGTAAACCCAAATTTGGAGAAGATGGGGTACGATCTCAATAGATCTTTGTTGGAGTTTTGA

Network for GWHGAAZE023671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00174.20	Oxidored_molyb	156	338	1.60E-52
PF03404.17	Mo-co_dimer	366	495	2.20E-53
PF00173.29	Cyt-b5	546	615	3.30E-20
PF00970.25	FAD_binding_6	638	742	1.90E-33
PF00175.22	NAD_binding_1	762	869	1.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10534	NR	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0006809	biological_process	nitric oxide biosynthetic process
GO:0042128	biological_process	nitrate assimilation
GO:0055114	biological_process	oxidation-reduction process
GO:0020037	molecular_function	heme binding
GO:0050464	molecular_function	nitrate reductase (NADPH) activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0030151	molecular_function	molybdenum ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.118
	SRR3591707	mature leaf	6.411
	SRR3591708	Shoot apex	0.054
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.087
	SRR3591711	White flower	0.237
	SRR3591712	Green floral bud	0.092
	SRR3591713	Yellow flower	0.110
SRP173429	SRR8316895	Juvenile bud stage	1.075
	SRR8316896	Juvenile bud stage	1.274
	SRR8316897	Juvenile bud stage	0.936
	SRR8316894	Third green stage	0.139
	SRR8316900	Third green stage	0.583
	SRR8316901	Third green stage	0.552
	SRR8316898	Complete white stage	0.257
	SRR8316899	Complete white stage	0.890
	SRR8316903	Complete white stage	0.340
	SRR8316902	Silver flowering stage	1.014
	SRR8316904	Silver flowering stage	1.032
	SRR8316905	Silver flowering stage	0.652
	SRR8316906	Gold flowering stage	6.471
	SRR8316907	Gold flowering stage	5.035
	SRR8316908	Gold flowering stage	7.949
SRP132670	SRR6706286	Control	2.408
	SRR6706287	Light intensity 50%	1.806
	SRR6706288	Light intensity 20%	1.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.437
	CNS0095593	Slightly white alabastrum(diploid) 2	1.205
	CNS0095594	Slightly white alabastrum(diploid) 3	2.228
	CNS0095595	Whole white alabastrum(diploid) 2	1.243
	CNS0095596	Whole white alabastrum(diploid) 3	1.144
	CNS0095597	Whole white alabastrum(diploid) 4	2.365
	CNS0095598	Silvery flower (diploied) 1	1.477
	CNS0095599	Silvery flower (diploied) 2	2.257
	CNS0095600	Silvery flower (diploied) 3	1.270
	CNS0095601	Golden flower (diploid) 1	1.259
	CNS0095602	Golden flower (diploid) 2	1.540
	CNS0095603	Golden flower (diploid) 3	1.232
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.825
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.795
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.868
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.891
	CNS0095610	Silvery flower (tetraploid) 1	6.130
	CNS0095611	Silvery flower (tetraploid) 2	4.086
	CNS0095612	Silvery flower (tetraploid) 3	51.916
	CNS0095613	Golden flower (tetraploid) 1	4.733
	CNS0095614	Golden flower (tetraploid) 2	5.192
	CNS0095615	Golden flower (tetraploid) 3	0.867
CRA001975	CRR073297	Stem 1	2.282
	CRR073298	Stem 2	1.576
	CRR073299	Stem 3	0.787
	CRR073300	Leaf 1	2.112
	CRR073301	Leaf 2	2.901
	CRR073302	Leaf 3	0.956
	CRR073303	Juvenile bud 1	0.509
	CRR073304	Juvenile bud 2	0.215
	CRR073305	Juvenile bud 3	0.955
	CRR073306	Third green 1	2.592
	CRR073307	Third green 2	0.539
	CRR073308	Third green 3	0.972
	CRR073309	Second white 1	3.478
	CRR073310	Second white 2	8.523
	CRR073311	Second white 3	14.731
	CRR073312	Silver flowering 1	7.623
	CRR073313	Silver flowering 2	3.867
	CRR073314	Silver flowering 3	6.232
	CRR073315	Gold flowering 1	16.058
	CRR073316	Gold flowering 2	46.899
	CRR073317	Gold flowering 3	18.007
	CRR073318	Tawny withering 1	4.936
	CRR073319	Tawny withering 2	2.919
	CRR073320	Tawny withering 3	1.527