Detail information of GWHGAAZE023683


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081596.10PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Sesamum indicum]
COGYP_721315.10heavy metal translocating P-type ATPase
Swissprottr|B9DFX7|HMA8_ARATH0Copper-transporting ATPase PAA2, chloroplastic (Precursor)
trEMBLtr|K4CKV0|K4CKV0_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g061610.2.1}
TAIR10AT5G21930.20P-type ATPase of Arabidopsis 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2204166022061890-
GWHAAZE00000007mRNA2204166022061890-
GWHAAZE00000007exon2206126022061890-
GWHAAZE00000007exon2206029622060373-
GWHAAZE00000007exon2205771822057815-
GWHAAZE00000007exon2205755722057610-
GWHAAZE00000007exon2205617222056258-
GWHAAZE00000007exon2205526822055432-
GWHAAZE00000007exon2205400522054115-
GWHAAZE00000007exon2205234522052413-
GWHAAZE00000007exon2205034822050457-
GWHAAZE00000007exon2204863222048737-
GWHAAZE00000007exon2204632222046388-
GWHAAZE00000007exon2204606322046142-
GWHAAZE00000007exon2204545722045911-
GWHAAZE00000007exon2204393522044109-
GWHAAZE00000007exon2204366922043800-
GWHAAZE00000007exon2204262722042777-
GWHAAZE00000007exon2204166022042071-
GWHAAZE00000007CDS2206126022061890-
GWHAAZE00000007CDS2206029622060373-
GWHAAZE00000007CDS2205771822057815-
GWHAAZE00000007CDS2205755722057610-
GWHAAZE00000007CDS2205617222056258-
GWHAAZE00000007CDS2205526822055432-
GWHAAZE00000007CDS2205400522054115-
GWHAAZE00000007CDS2205234522052413-
GWHAAZE00000007CDS2205034822050457-
GWHAAZE00000007CDS2204863222048737-
GWHAAZE00000007CDS2204632222046388-
GWHAAZE00000007CDS2204606322046142-
GWHAAZE00000007CDS2204545722045911-
GWHAAZE00000007CDS2204393522044109-
GWHAAZE00000007CDS2204366922043800-
GWHAAZE00000007CDS2204262722042777-
GWHAAZE00000007CDS2204195322042071-
GWHAAZE00000007three_prime_UTR2204166022041952-
Transcript Sequence

Network for GWHGAAZE023683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.27HMA821463.50E-06
PF00122.21E1-E2_ATPase3475295.60E-47
PF00702.27Hydrolase5457774.50E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17686copA, ctpA, ATP7 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName
GO:0030001biological_processmetal ion transport
GO:0006812biological_processcation transport
GO:0016021cellular_componentintegral component of membrane
GO:0000166molecular_functionnucleotide binding
GO:0046872molecular_functionmetal ion binding
GO:0019829molecular_functionATPase-coupled cation transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.762
SRR3591706second leaf56.191
SRR3591707mature leaf47.991
SRR3591708Shoot apex39.893
SRR3591709Stem19.302
SRR3591710White floral bud86.159
SRR3591711White flower52.263
SRR3591712Green floral bud40.907
SRR3591713Yellow flower48.846
SRP173429 SRR8316895Juvenile bud stage 25.932
SRR8316896Juvenile bud stage 31.693
SRR8316897Juvenile bud stage 18.175
SRR8316894Third green stage 16.024
SRR8316900Third green stage 47.399
SRR8316901Third green stage 45.791
SRR8316898Complete white stage 30.378
SRR8316899Complete white stage 47.344
SRR8316903Complete white stage 52.468
SRR8316902Silver flowering stage19.094
SRR8316904Silver flowering stage30.511
SRR8316905Silver flowering stage15.732
SRR8316906Gold flowering stage 48.814
SRR8316907Gold flowering stage 41.888
SRR8316908Gold flowering stage 52.108
SRP132670SRR6706286Control41.176
SRR6706287Light intensity 50%42.658
SRR6706288Light intensity 20%46.548
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.039
CNS0095593Slightly white alabastrum(diploid) 227.598
CNS0095594Slightly white alabastrum(diploid) 323.358
CNS0095595Whole white alabastrum(diploid) 225.926
CNS0095596Whole white alabastrum(diploid) 322.018
CNS0095597Whole white alabastrum(diploid) 422.247
CNS0095598Silvery flower (diploied) 156.654
CNS0095599Silvery flower (diploied) 250.071
CNS0095600Silvery flower (diploied) 365.596
CNS0095601Golden flower (diploid) 149.512
CNS0095602Golden flower (diploid) 274.320
CNS0095603Golden flower (diploid) 372.246
CNS0095604Slightly white alabastrum(tetraploid) 128.103
CNS0095605Slightly white alabastrum(tetraploid) 224.174
CNS0095606Slightly white alabastrum(tetraploid) 361.554
CNS0095607Whole white alabastrum(tetraploid) 118.919
CNS0095608Whole white alabastrum(tetraploid) 213.976
CNS0095609Whole white alabastrum(tetraploid) 343.867
CNS0095610Silvery flower (tetraploid) 159.800
CNS0095611Silvery flower (tetraploid) 258.364
CNS0095612Silvery flower (tetraploid) 348.771
CNS0095613Golden flower (tetraploid) 132.571
CNS0095614Golden flower (tetraploid) 261.121
CNS0095615Golden flower (tetraploid) 341.775
CRA001975CRR073297Stem 141.613
CRR073298Stem 241.825
CRR073299Stem 339.378
CRR073300Leaf 144.463
CRR073301Leaf 239.004
CRR073302Leaf 337.484
CRR073303Juvenile bud 137.289
CRR073304Juvenile bud 238.769
CRR073305Juvenile bud 350.457
CRR073306Third green 127.391
CRR073307Third green 220.699
CRR073308Third green 322.404
CRR073309Second white 121.208
CRR073310Second white 221.763
CRR073311Second white 321.284
CRR073312Silver flowering 131.058
CRR073313Silver flowering 230.626
CRR073314Silver flowering 328.927
CRR073315Gold flowering 112.763
CRR073316Gold flowering 224.256
CRR073317Gold flowering 314.838
CRR073318Tawny withering 118.665
CRR073319Tawny withering 234.265
CRR073320Tawny withering 39.624