Detail information of GWHGAAZE023688


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009334679.10PREDICTED: F-box/LRR-repeat protein 15-like [Pyrus x bretschneideri]
COGYP_008925.10.0000003hypothetical protein pc1926
Swissprottr|Q9SMY8|FBL15_ARATH0F-box/LRR-repeat protein 15
trEMBLtr|M1BME5|M1BME5_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400048411}
TAIR10AT4G33210.10F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2216724622182553-
GWHAAZE00000007mRNA2216724622182553-
GWHAAZE00000007exon2218217122182553-
GWHAAZE00000007exon2218069022180810-
GWHAAZE00000007exon2218033722180469-
GWHAAZE00000007exon2217859622178695-
GWHAAZE00000007exon2217831422178511-
GWHAAZE00000007exon2217700122177271-
GWHAAZE00000007exon2217681322176911-
GWHAAZE00000007exon2217630322176391-
GWHAAZE00000007exon2217610222176201-
GWHAAZE00000007exon2217583322176003-
GWHAAZE00000007exon2217499122175104-
GWHAAZE00000007exon2217171422171866-
GWHAAZE00000007exon2217059822170758-
GWHAAZE00000007exon2216999722170195-
GWHAAZE00000007exon2216860222169038-
GWHAAZE00000007exon2216822922168292-
GWHAAZE00000007exon2216724622167371-
GWHAAZE00000007CDS2218217122182553-
GWHAAZE00000007CDS2218069022180810-
GWHAAZE00000007CDS2218033722180469-
GWHAAZE00000007CDS2217859622178695-
GWHAAZE00000007CDS2217831422178511-
GWHAAZE00000007CDS2217700122177271-
GWHAAZE00000007CDS2217681322176911-
GWHAAZE00000007CDS2217630322176391-
GWHAAZE00000007CDS2217610222176201-
GWHAAZE00000007CDS2217583322176003-
GWHAAZE00000007CDS2217499122175104-
GWHAAZE00000007CDS2217171422171866-
GWHAAZE00000007CDS2217059822170758-
GWHAAZE00000007CDS2216999722170195-
GWHAAZE00000007CDS2216860222169038-
GWHAAZE00000007CDS2216822922168292-
GWHAAZE00000007CDS2216724622167371-
Transcript Sequence

Network for GWHGAAZE023688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like1692021.70E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.981
SRR3591706second leaf16.506
SRR3591707mature leaf18.719
SRR3591708Shoot apex24.318
SRR3591709Stem23.454
SRR3591710White floral bud27.437
SRR3591711White flower28.184
SRR3591712Green floral bud28.573
SRR3591713Yellow flower19.831
SRP173429 SRR8316895Juvenile bud stage 12.079
SRR8316896Juvenile bud stage 17.897
SRR8316897Juvenile bud stage 9.238
SRR8316894Third green stage 7.632
SRR8316900Third green stage 15.553
SRR8316901Third green stage 15.545
SRR8316898Complete white stage 4.933
SRR8316899Complete white stage 17.876
SRR8316903Complete white stage 11.336
SRR8316902Silver flowering stage6.083
SRR8316904Silver flowering stage9.714
SRR8316905Silver flowering stage4.323
SRR8316906Gold flowering stage 12.150
SRR8316907Gold flowering stage 11.875
SRR8316908Gold flowering stage 14.129
SRP132670SRR6706286Control11.272
SRR6706287Light intensity 50%11.640
SRR6706288Light intensity 20%12.979
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.099
CNS0095593Slightly white alabastrum(diploid) 211.448
CNS0095594Slightly white alabastrum(diploid) 39.872
CNS0095595Whole white alabastrum(diploid) 210.524
CNS0095596Whole white alabastrum(diploid) 38.629
CNS0095597Whole white alabastrum(diploid) 49.766
CNS0095598Silvery flower (diploied) 114.382
CNS0095599Silvery flower (diploied) 211.372
CNS0095600Silvery flower (diploied) 317.019
CNS0095601Golden flower (diploid) 19.494
CNS0095602Golden flower (diploid) 219.712
CNS0095603Golden flower (diploid) 318.674
CNS0095604Slightly white alabastrum(tetraploid) 115.552
CNS0095605Slightly white alabastrum(tetraploid) 211.406
CNS0095606Slightly white alabastrum(tetraploid) 324.931
CNS0095607Whole white alabastrum(tetraploid) 111.160
CNS0095608Whole white alabastrum(tetraploid) 29.863
CNS0095609Whole white alabastrum(tetraploid) 316.867
CNS0095610Silvery flower (tetraploid) 116.052
CNS0095611Silvery flower (tetraploid) 218.421
CNS0095612Silvery flower (tetraploid) 315.948
CNS0095613Golden flower (tetraploid) 18.644
CNS0095614Golden flower (tetraploid) 214.606
CNS0095615Golden flower (tetraploid) 318.133
CRA001975CRR073297Stem 124.199
CRR073298Stem 221.433
CRR073299Stem 320.866
CRR073300Leaf 122.371
CRR073301Leaf 222.371
CRR073302Leaf 316.177
CRR073303Juvenile bud 116.989
CRR073304Juvenile bud 210.484
CRR073305Juvenile bud 322.778
CRR073306Third green 19.743
CRR073307Third green 25.692
CRR073308Third green 39.401
CRR073309Second white 18.489
CRR073310Second white 211.779
CRR073311Second white 314.737
CRR073312Silver flowering 114.196
CRR073313Silver flowering 216.127
CRR073314Silver flowering 312.880
CRR073315Gold flowering 18.809
CRR073316Gold flowering 216.453
CRR073317Gold flowering 311.292
CRR073318Tawny withering 121.184
CRR073319Tawny withering 216.687
CRR073320Tawny withering 319.142