Gene detail

Detail information of GWHGAAZE023695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009781066.1	8.7796E-101	PREDICTED: uncharacterized protein LOC104230033 [Nicotiana sylvestris]
trEMBL	tr\|D7STW2\|D7STW2_VITVI	1E-98	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20711.3}
TAIR10	AT5G47430.1	2E-12	DWNN domain, a CCHC-type zinc finger

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	22517989	22525104	+
GWHAAZE00000007	mRNA	22517989	22525104	+
GWHAAZE00000007	exon	22517989	22518255	+
GWHAAZE00000007	exon	22518443	22518527	+
GWHAAZE00000007	exon	22522252	22522312	+
GWHAAZE00000007	exon	22522816	22522952	+
GWHAAZE00000007	exon	22523868	22523924	+
GWHAAZE00000007	exon	22524007	22524075	+
GWHAAZE00000007	exon	22524164	22524294	+
GWHAAZE00000007	exon	22524932	22525104	+
GWHAAZE00000007	five_prime_UTR	22517989	22518080	+
GWHAAZE00000007	CDS	22518081	22518255	+
GWHAAZE00000007	CDS	22518443	22518527	+
GWHAAZE00000007	CDS	22522252	22522312	+
GWHAAZE00000007	CDS	22522816	22522952	+
GWHAAZE00000007	CDS	22523868	22523924	+
GWHAAZE00000007	CDS	22524007	22524075	+
GWHAAZE00000007	CDS	22524164	22524294	+
GWHAAZE00000007	CDS	22524932	22525104	+

Transcript Sequence
>GWHTAAZE023725 ATCTCTCTCTCTAATTCATTCAGACAAACAAGAACAGTGTATTTTCATTCATGATCTGATCAGAGATAAGAGCTGAAATAAATATATTAACCATGTCTGTGAGATTCAAATTCAGAAGCTCCGTTAACTTCGATTCGATTGACATCGGAGAAGGCCGATCTTCGATCTCGATTAAAGACCTGAGGTACAAAATCCTTCGCCAAAAGAACAACAACAACATCTGCCAAGACTTCGATCTCGTCTTCTCCGATGGTCTCACCGGCCGAGAGTACAATGACGATAATTTTCCGATTCCGAGTGGTTCGAGTGTAATTATTAAGCGAGTTCCTGCCGGAATGGTGACACCAGCTCCGGCGGTCATTGAATCAGATGGAAATTGTAGGATGAAAGACTCTAAAACCCTCAGTCCTTTGGGTGGACAAATGGATGACTTTGATGACTTTGGGATCGATTTGTGTCCAGCTCCTGAGGCAATGGTACCCGAATTTGATCAAGAATTTTCTAAGAAGAATTGCGTGAACAATGAAAAGGATAATATTACAGCTTCAAGGTTAGAATGTCAAAAGCTTGAAGTAAGTGATCTTATCGAGGCTATTCCAAGAGGTGGAGTGCTTAATGAAGTAAATATTCCACAGAAGTTCGAACCAAAAGCTGAAGAGCAAATGAAGTTGGAAAAGGCCATTGGCGCTAATTATTCAGCTGTACAAAATGCTGATTTGCCATCAGAACTGAAATGCCCTCTTTGCAATGCTTTTTTCAAGGAGGCTGTTATGATACCATGTTGCCAGCTAAGTTTTTGTGAAAAATGCATTCGCGTAGTGCTCATTGACAAGGGAAGGTGTCCCAAATGCTTCTCCAATAAATGCAGGGTAGAGGATTTGCTACCAAACCTGTCTCTTAGGCAAGCAATTGAGCGTTTCCTTGAATCTCAAATGCTCATGACAGACAATGCTTTGCATGAATATGCTCCCGGTGGGTGA

Network for GWHGAAZE023695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08783.12	DWNN	3	79	7.50E-18
PF13923.7	zf-C3HC4_2	214	253	9.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.792
	SRR3591706	second leaf	2.226
	SRR3591707	mature leaf	3.740
	SRR3591708	Shoot apex	1.389
	SRR3591709	Stem	3.489
	SRR3591710	White floral bud	4.556
	SRR3591711	White flower	3.799
	SRR3591712	Green floral bud	1.759
	SRR3591713	Yellow flower	3.605
SRP173429	SRR8316895	Juvenile bud stage	3.064
	SRR8316896	Juvenile bud stage	4.767
	SRR8316897	Juvenile bud stage	1.729
	SRR8316894	Third green stage	2.131
	SRR8316900	Third green stage	5.274
	SRR8316901	Third green stage	4.895
	SRR8316898	Complete white stage	2.786
	SRR8316899	Complete white stage	5.919
	SRR8316903	Complete white stage	4.880
	SRR8316902	Silver flowering stage	2.518
	SRR8316904	Silver flowering stage	5.681
	SRR8316905	Silver flowering stage	2.045
	SRR8316906	Gold flowering stage	5.491
	SRR8316907	Gold flowering stage	4.128
	SRR8316908	Gold flowering stage	7.065
SRP132670	SRR6706286	Control	5.445
	SRR6706287	Light intensity 50%	4.184
	SRR6706288	Light intensity 20%	4.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.957
	CNS0095593	Slightly white alabastrum(diploid) 2	1.136
	CNS0095594	Slightly white alabastrum(diploid) 3	1.389
	CNS0095595	Whole white alabastrum(diploid) 2	1.373
	CNS0095596	Whole white alabastrum(diploid) 3	1.229
	CNS0095597	Whole white alabastrum(diploid) 4	1.577
	CNS0095598	Silvery flower (diploied) 1	2.565
	CNS0095599	Silvery flower (diploied) 2	2.507
	CNS0095600	Silvery flower (diploied) 3	6.139
	CNS0095601	Golden flower (diploid) 1	1.375
	CNS0095602	Golden flower (diploid) 2	5.875
	CNS0095603	Golden flower (diploid) 3	6.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.255
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.483
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.442
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.681
	CNS0095610	Silvery flower (tetraploid) 1	3.308
	CNS0095611	Silvery flower (tetraploid) 2	3.600
	CNS0095612	Silvery flower (tetraploid) 3	3.687
	CNS0095613	Golden flower (tetraploid) 1	1.983
	CNS0095614	Golden flower (tetraploid) 2	4.181
	CNS0095615	Golden flower (tetraploid) 3	2.803
CRA001975	CRR073297	Stem 1	4.404
	CRR073298	Stem 2	5.409
	CRR073299	Stem 3	3.907
	CRR073300	Leaf 1	5.063
	CRR073301	Leaf 2	4.340
	CRR073302	Leaf 3	2.940
	CRR073303	Juvenile bud 1	1.648
	CRR073304	Juvenile bud 2	1.647
	CRR073305	Juvenile bud 3	2.515
	CRR073306	Third green 1	1.945
	CRR073307	Third green 2	2.213
	CRR073308	Third green 3	2.643
	CRR073309	Second white 1	2.056
	CRR073310	Second white 2	2.534
	CRR073311	Second white 3	2.398
	CRR073312	Silver flowering 1	3.048
	CRR073313	Silver flowering 2	4.174
	CRR073314	Silver flowering 3	2.425
	CRR073315	Gold flowering 1	1.796
	CRR073316	Gold flowering 2	2.662
	CRR073317	Gold flowering 3	2.294
	CRR073318	Tawny withering 1	0.972
	CRR073319	Tawny withering 2	1.800
	CRR073320	Tawny withering 3	2.278