Gene detail

Detail information of GWHGAAZE023700

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648378.1	1.1824E-176	PREDICTED: uncharacterized protein LOC100252571 [Vitis vinifera]
trEMBL	tr\|D7STW2\|D7STW2_VITVI	4E-177	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20711.3}
TAIR10	AT5G47430.3	4E-13	DWNN domain, a CCHC-type zinc finger

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	22759518	22772804	+
GWHAAZE00000007	mRNA	22759518	22772804	+
GWHAAZE00000007	exon	22759518	22759784	+
GWHAAZE00000007	exon	22759976	22760060	+
GWHAAZE00000007	exon	22765397	22765457	+
GWHAAZE00000007	exon	22765958	22766094	+
GWHAAZE00000007	exon	22767015	22767067	+
GWHAAZE00000007	exon	22767144	22767222	+
GWHAAZE00000007	exon	22767311	22767441	+
GWHAAZE00000007	exon	22768079	22768243	+
GWHAAZE00000007	exon	22768627	22768941	+
GWHAAZE00000007	exon	22769075	22769122	+
GWHAAZE00000007	exon	22769216	22769272	+
GWHAAZE00000007	exon	22770138	22770327	+
GWHAAZE00000007	exon	22770881	22771012	+
GWHAAZE00000007	exon	22771862	22771977	+
GWHAAZE00000007	exon	22772063	22772550	+
GWHAAZE00000007	exon	22772763	22772804	+
GWHAAZE00000007	five_prime_UTR	22759518	22759609	+
GWHAAZE00000007	CDS	22759610	22759784	+
GWHAAZE00000007	CDS	22759976	22760060	+
GWHAAZE00000007	CDS	22765397	22765457	+
GWHAAZE00000007	CDS	22765958	22766094	+
GWHAAZE00000007	CDS	22767015	22767067	+
GWHAAZE00000007	CDS	22767144	22767222	+
GWHAAZE00000007	CDS	22767311	22767441	+
GWHAAZE00000007	CDS	22768079	22768243	+
GWHAAZE00000007	CDS	22768627	22768941	+
GWHAAZE00000007	CDS	22769075	22769122	+
GWHAAZE00000007	CDS	22769216	22769272	+
GWHAAZE00000007	CDS	22770138	22770327	+
GWHAAZE00000007	CDS	22770881	22771012	+
GWHAAZE00000007	CDS	22771862	22771977	+
GWHAAZE00000007	CDS	22772063	22772550	+
GWHAAZE00000007	CDS	22772763	22772804	+

Transcript Sequence
>GWHTAAZE023730 ATCTCTCTCTCTAATTCATTCAGACAAACAAGAACAGTGTATTTTCATTCATGATCTGATCAGAGATAAGAGCTGAAATAAATATATTAACCATGTCTGTGAGATTCAAATTCAGAAGCTCCGTTAACTTCGATTCGATTGACATCGGAGAAGGCCGATCTTCGATCTCGATTAAAGACCTGAGGTACAAAATCCTTCGCCAAAAGAACAACAACAACATCTGCCAAGACTTCGATCTCGTCTTCTCCGATGCTCTCACCGGCCGAGAGTACAATGACGAGAATTTTCTGATTCCGAGTGGTTCGAGTGTAATTATTAAGCGAGTTCCTGCCGGAATGGTGACAACAGCTCCGGCGGTCATTGAATCAGATGGAAATTGTAGGATGAAAGACTCTAAAACCCTCAGTCCTTTGGGTGGACAAATGGATGACTTTGATGACTTTGGGATCGATTTGTGTCCAGCTCCTGAGGCAATGGTACCCGAATTTGATCAAGAATTTTCTAAGAAGAATTGCGTGAACAATGAAAAGGATAATATTACAGCTTCAAGGTTAGAATGTCAAAAGCTTGAAGTAAGTGATCTTATCGAGGCTATTCCAAGAGATTCCTTTCGTAGTGCGAATGAAGTAAATATTCCACAGAAGTTCGAACCAAAAGCTGAAGAGCAAATGAAGTTGGAAAAGGCCATTGGCGCTAATTATTCAGCTGTACAAAATGCTGATTTGCCATCAGAACTGAAATGCCCTCTTTGCAATGCTTTTTTCAAGGAGGCTGTTATGATACCATGTTGCCAGCTAAGTTTTTGTGAAAAATGCATTCGCGTAGTGCTCATTGACAAGGGAAGGTGTCCCAAATGCTTCTCCAATAAATGCAGGGTAGAGGATTTGCTACCAAACCTGTCTCTTAGGCAAGCAATTGAGCGTTTCCTTGAATCTCAAATGCTCATGACAGACAATGCTTTGCATGAATATGCTCCCGATGGTGAATCTGGAATTCAAGCTTTAGATTTTTCTTGTGCTGTCACTATTGGTCAAAAGGAGTTTGACTTGCCGCATTCTTCCTCTGCAACGGAGAAAGGGTCGAATCAAATTATGGGAGGATTTTTCCCCGAGTCACGGATCAGGAAAAATGCATCCTTAGAAAGCAAAGTTTTGAAATTAGCTTCTTCATCACATAAGGTAAAACAAATTGATGGTGAAATTCAAAGTGGACCTCAAGATTTGGCTTCTGTTTCTGATTTTCAAGGGGAAAATCAACCCCTGAATTTTGCTCGAACCCGTTTGCATGAGACAGCCGATTCAACTGTCAGGAAACAGAGTGGACTATGGGTTGACAATGGCGGTGGTAGGAGTTTTATGTCTGCTGGTAGACACAGAATGGTAATTACATGCAGCACAAGAAATCCTATGTTTCCTGGAGGTATGCTTCCTGGAGGTATGGCGGGTTATGGACCACCCTACTGGAACGGCGGTTCATTTGCCCCCACGAGGCCCTTCACAAATATGTATGGCCATCCTGGGATGATGCCCTTCAATCCTGCTATGCTTCCAGTTTCACCATATGCCATTCCTCCACACATTTCCTCCATTGGAATTATGAGGATGGGAGGTTTGGCACCTCCGGTAGGGATCAGAGGCGAGCGCCCTGTTAGCCATTCAGAGCTTTTGGAGCTTCAAGAATGTGAGAAAAGAGGAAAACTTTTCGATGAGAACGTGGGGAGACGTAGGCGTTATGATGCTCAAGATGATTTCCATCAACGCCATCACTATAATGAACCAGAACGGTCTTATGATAATAAATCTCGTTCGGAAAGGGAAGAGACTGCTAGCCACTCAGGCATGGAAAAAGTTCTCGTTCCTCAGGTAGAGATAGGAGGCATCATCTATCAGAGAGATCAAGTTCGGGGGTTGAAGATATTGTGTCCAATAGCTGTGATAAATACTGTGATGACGGACATGAAAAACACCATAGAAGCTCCAAAAGGCACCACGAAAGAAGGGGGCAGTGTGGCACTGACTCTAGCCGGAGTCACCATAAATCCCGAAAAGAAAACGATGCTCAAAGGAGAGTTGATAGTGTCAGCAAAGTTTCCAATCGGAAACATCACAGCCACTCGGAATCTGTTCTGGAACCAAGTTCTTCATGTGATCAGGAAAAGAAATACAGGGATAGACATCACGTTCGTGGTTTTGGGCCCATCAGCAACGAACCGTGTGGCGACAGGTGGCAGATGGTCAGCAGGCTGGACGATGACAGCCCGGAAGGTTCTCATCAACACAAGCGAAAAAGAACCTTCTAGAACAAGACAGGCCTGGGGTTCTGAGATAGACAGTAGAGTGGTCAACTTTTGGACAGTAACATCATGA

Network for GWHGAAZE023700

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08783.12	DWNN	3	79	2.80E-18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.163
	SRR3591706	second leaf	6.399
	SRR3591707	mature leaf	8.651
	SRR3591708	Shoot apex	6.731
	SRR3591709	Stem	11.854
	SRR3591710	White floral bud	14.444
	SRR3591711	White flower	14.402
	SRR3591712	Green floral bud	7.203
	SRR3591713	Yellow flower	9.271
SRP173429	SRR8316895	Juvenile bud stage	6.569
	SRR8316896	Juvenile bud stage	10.309
	SRR8316897	Juvenile bud stage	4.015
	SRR8316894	Third green stage	4.258
	SRR8316900	Third green stage	8.239
	SRR8316901	Third green stage	8.451
	SRR8316898	Complete white stage	4.939
	SRR8316899	Complete white stage	11.923
	SRR8316903	Complete white stage	9.243
	SRR8316902	Silver flowering stage	6.153
	SRR8316904	Silver flowering stage	8.666
	SRR8316905	Silver flowering stage	3.783
	SRR8316906	Gold flowering stage	12.607
	SRR8316907	Gold flowering stage	11.980
	SRR8316908	Gold flowering stage	13.088
SRP132670	SRR6706286	Control	8.978
	SRR6706287	Light intensity 50%	8.552
	SRR6706288	Light intensity 20%	9.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.919
	CNS0095593	Slightly white alabastrum(diploid) 2	3.796
	CNS0095594	Slightly white alabastrum(diploid) 3	4.308
	CNS0095595	Whole white alabastrum(diploid) 2	4.495
	CNS0095596	Whole white alabastrum(diploid) 3	2.873
	CNS0095597	Whole white alabastrum(diploid) 4	3.627
	CNS0095598	Silvery flower (diploied) 1	6.379
	CNS0095599	Silvery flower (diploied) 2	5.891
	CNS0095600	Silvery flower (diploied) 3	11.259
	CNS0095601	Golden flower (diploid) 1	6.416
	CNS0095602	Golden flower (diploid) 2	11.107
	CNS0095603	Golden flower (diploid) 3	10.777
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.258
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.584
	CNS0095610	Silvery flower (tetraploid) 1	20.597
	CNS0095611	Silvery flower (tetraploid) 2	16.500
	CNS0095612	Silvery flower (tetraploid) 3	22.956
	CNS0095613	Golden flower (tetraploid) 1	9.853
	CNS0095614	Golden flower (tetraploid) 2	16.882
	CNS0095615	Golden flower (tetraploid) 3	23.220
CRA001975	CRR073297	Stem 1	9.684
	CRR073298	Stem 2	7.966
	CRR073299	Stem 3	5.100
	CRR073300	Leaf 1	7.729
	CRR073301	Leaf 2	6.760
	CRR073302	Leaf 3	3.105
	CRR073303	Juvenile bud 1	4.254
	CRR073304	Juvenile bud 2	3.230
	CRR073305	Juvenile bud 3	5.910
	CRR073306	Third green 1	3.437
	CRR073307	Third green 2	2.657
	CRR073308	Third green 3	3.293
	CRR073309	Second white 1	2.754
	CRR073310	Second white 2	2.977
	CRR073311	Second white 3	3.160
	CRR073312	Silver flowering 1	4.393
	CRR073313	Silver flowering 2	5.015
	CRR073314	Silver flowering 3	3.398
	CRR073315	Gold flowering 1	3.644
	CRR073316	Gold flowering 2	4.936
	CRR073317	Gold flowering 3	2.333
	CRR073318	Tawny withering 1	3.589
	CRR073319	Tawny withering 2	3.759
	CRR073320	Tawny withering 3	4.548