Gene detail

Detail information of GWHGAAZE023714

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13448.1	1.73601E-81	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	3E-10	Protein NLP7
trEMBL	tr\|A0A068V0M6\|A0A068V0M6_COFCA	6E-82	Coffea canephora DH200=94 genomic scaffold, scaffold_75 {ECO:0000313\|EMBL:CDP13448.1}
TAIR10	AT5G16100.1	5E-11	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	23554114	23556625	-
GWHAAZE00000007	mRNA	23554114	23556625	-
GWHAAZE00000007	exon	23556043	23556625	-
GWHAAZE00000007	exon	23555402	23555513	-
GWHAAZE00000007	exon	23555123	23555304	-
GWHAAZE00000007	exon	23554569	23554654	-
GWHAAZE00000007	exon	23554114	23554257	-
GWHAAZE00000007	five_prime_UTR	23556461	23556625	-
GWHAAZE00000007	CDS	23556043	23556460	-
GWHAAZE00000007	CDS	23555402	23555513	-
GWHAAZE00000007	CDS	23555123	23555304	-
GWHAAZE00000007	CDS	23554569	23554654	-
GWHAAZE00000007	CDS	23554114	23554257	-

Transcript Sequence
>GWHTAAZE023744 TTAAAACTTCCCCAATTCCTCTTCTCATTTCCCTCTCTTTCTCTCTCAATCACCAATTTTACTTCTTTGATTCTACACAAACAAACCATCCGTAGCGGCGCTTGGCCTTCTGCCAGGCGCCGCCACCACTACCATAATCACAAACTTTTAAGAAGAAAAAAGAAAATGGGAGATCCAATGGCTATCATCCCATATCACGATCCATTCGACGATATCAACACACTTGAGCAAATCCTCATGTCCGATGAAAATCCGAGCCTCAGCCTAACTGAATTTTCATCTTTTCAACAACCCATATCTTGTAACCCTTTGATTCCTCAATCCAGAGATGAAGAGATTGTGGACGCGGATGATCCACTCACCGATCCATTTCTTCAGGATTTGTGTAGCCACGAGGCAGGGCCCTCTCGAATGCAAGAGGAAACAAATCGGCAAGAGAGGGAAGGGTGTAGTGATTATACTTATAATACACAAGGTTATCAGAATATGGGAAGTCCAATTCAACTCTCGATGTGGCCTCTACCGGCAGTGCCTTATACTTGCACTTGTTGTCAAGTTCTAAGGGAAATAACTCATACTAATGGCATTGCAATTACAAAGCTTGAGATTCATGGAAGACTTGGTATCATTTGTCATGCAATTCTTGACAAGTTTTCTGCTGATTTTAGCCAAGCCCATGAGTACCAAATGTTCGATTTCTGCAAGGAAAGCATAAGTAGTGTGAAGCAATTCCTAGTTCAGTACTGCGAAGAGCGCAAACAAAACGGCTACATTATTATGATTCAAGATCCACTTTTGGTCTTTTACGAAGCATTGTGCGTTGGATTGGATTGGAATTGGAACTACAGTGATATGGATACCAATAACTTTGCATCAGAAGCAGCAAAGAAAATGGATGTATGCCTCACTGTTCTCAAGAAGATATGTCGCAGGCACGGATTAACGCGCTGGCCTTACAGAAAGATAAAAAGCATTAGGAGGAAGATATCAAAAGCAAGAGAAAGCTTGAATGGTGGTGATATTGAAGAAAGAATGAGGGCTGAAGCTGAAATACAGAGACTTCAAGAAAAACTTGCAAACATATATGGTGTTTTTAGTGATCCATGA

Network for GWHGAAZE023714

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	237	270	1.60E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.126
	SRR3591709	Stem	0.394
	SRR3591710	White floral bud	14.866
	SRR3591711	White flower	0.433
	SRR3591712	Green floral bud	7.239
	SRR3591713	Yellow flower	0.501
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.144
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	1.394
	SRR8316901	Third green stage	0.198
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.023
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.088
	SRR8316904	Silver flowering stage	0.487
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.704
	SRR6706287	Light intensity 50%	1.699
	SRR6706288	Light intensity 20%	1.465
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.368
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.166
	CNS0095595	Whole white alabastrum(diploid) 2	4.494
	CNS0095596	Whole white alabastrum(diploid) 3	3.507
	CNS0095597	Whole white alabastrum(diploid) 4	9.608
	CNS0095598	Silvery flower (diploied) 1	0.730
	CNS0095599	Silvery flower (diploied) 2	2.122
	CNS0095600	Silvery flower (diploied) 3	0.190
	CNS0095601	Golden flower (diploid) 1	0.387
	CNS0095602	Golden flower (diploid) 2	0.099
	CNS0095603	Golden flower (diploid) 3	0.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.834
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.995
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.528
	CNS0095610	Silvery flower (tetraploid) 1	0.407
	CNS0095611	Silvery flower (tetraploid) 2	1.054
	CNS0095612	Silvery flower (tetraploid) 3	2.617
	CNS0095613	Golden flower (tetraploid) 1	0.780
	CNS0095614	Golden flower (tetraploid) 2	0.070
	CNS0095615	Golden flower (tetraploid) 3	0.710
CRA001975	CRR073297	Stem 1	0.388
	CRR073298	Stem 2	0.062
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.794
	CRR073301	Leaf 2	0.542
	CRR073302	Leaf 3	0.249
	CRR073303	Juvenile bud 1	3.133
	CRR073304	Juvenile bud 2	0.601
	CRR073305	Juvenile bud 3	0.125
	CRR073306	Third green 1	0.833
	CRR073307	Third green 2	0.279
	CRR073308	Third green 3	0.642
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.097
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.477
	CRR073313	Silver flowering 2	0.447
	CRR073314	Silver flowering 3	0.446
	CRR073315	Gold flowering 1	0.082
	CRR073316	Gold flowering 2	0.270
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.509
	CRR073319	Tawny withering 2	0.529
	CRR073320	Tawny withering 3	0.974