Detail information of GWHGAAZE023749


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004248259.10PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Solanum lycopersicum]
COGNP_613558.17E-78phenylalanyl-tRNA synthetase subunit alpha
Swissprottr|Q9T034|SYFA_ARATH0Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|K4CXN6|K4CXN6_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g007060.2.1}
TAIR10AT4G39280.12E-148phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2486992924880323-
GWHAAZE00000007mRNA2486992924880323-
GWHAAZE00000007exon2486992924870090-
GWHAAZE00000007exon2487061124870665-
GWHAAZE00000007exon2487229324872418-
GWHAAZE00000007exon2487250624872572-
GWHAAZE00000007exon2487292624872997-
GWHAAZE00000007exon2487381524873911-
GWHAAZE00000007exon2487871424878810-
GWHAAZE00000007exon2487889024878974-
GWHAAZE00000007exon2487905824879134-
GWHAAZE00000007exon2488010724880145-
GWHAAZE00000007exon2488028024880323-
GWHAAZE00000007CDS2488028024880323-
GWHAAZE00000007CDS2488010724880145-
GWHAAZE00000007CDS2487905824879134-
GWHAAZE00000007CDS2487889024878974-
GWHAAZE00000007CDS2487871424878810-
GWHAAZE00000007CDS2487381524873911-
GWHAAZE00000007CDS2487292624872997-
GWHAAZE00000007CDS2487250624872572-
GWHAAZE00000007CDS2487229324872418-
GWHAAZE00000007CDS2487061124870665-
GWHAAZE00000007CDS2487003724870090-
GWHAAZE00000007three_prime_UTR2486992924870036-
Transcript Sequence

Network for GWHGAAZE023749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01409.21tRNA-synt_2d22551.20E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01889FARSA, pheS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0043039biological_processtRNA aminoacylation
GO:0006432biological_processphenylalanyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0000049molecular_functiontRNA binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0000166molecular_functionnucleotide binding
GO:0004826molecular_functionphenylalanine-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.003
SRR3591706second leaf4.433
SRR3591707mature leaf4.335
SRR3591708Shoot apex12.559
SRR3591709Stem8.296
SRR3591710White floral bud11.221
SRR3591711White flower11.559
SRR3591712Green floral bud17.569
SRR3591713Yellow flower12.680
SRP173429 SRR8316895Juvenile bud stage 14.040
SRR8316896Juvenile bud stage 20.818
SRR8316897Juvenile bud stage 0.302
SRR8316894Third green stage 7.919
SRR8316900Third green stage 23.420
SRR8316901Third green stage 20.207
SRR8316898Complete white stage 8.389
SRR8316899Complete white stage 23.475
SRR8316903Complete white stage 9.608
SRR8316902Silver flowering stage6.175
SRR8316904Silver flowering stage7.843
SRR8316905Silver flowering stage2.327
SRR8316906Gold flowering stage 11.260
SRR8316907Gold flowering stage 14.144
SRR8316908Gold flowering stage 3.230
SRP132670SRR6706286Control17.320
SRR6706287Light intensity 50%15.094
SRR6706288Light intensity 20%16.335
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.331
CNS0095593Slightly white alabastrum(diploid) 226.615
CNS0095594Slightly white alabastrum(diploid) 325.898
CNS0095595Whole white alabastrum(diploid) 227.137
CNS0095596Whole white alabastrum(diploid) 334.651
CNS0095597Whole white alabastrum(diploid) 430.874
CNS0095598Silvery flower (diploied) 119.851
CNS0095599Silvery flower (diploied) 217.318
CNS0095600Silvery flower (diploied) 321.312
CNS0095601Golden flower (diploid) 122.969
CNS0095602Golden flower (diploid) 221.059
CNS0095603Golden flower (diploid) 319.255
CNS0095604Slightly white alabastrum(tetraploid) 12.980
CNS0095605Slightly white alabastrum(tetraploid) 21.327
CNS0095606Slightly white alabastrum(tetraploid) 34.217
CNS0095607Whole white alabastrum(tetraploid) 11.618
CNS0095608Whole white alabastrum(tetraploid) 23.079
CNS0095609Whole white alabastrum(tetraploid) 32.347
CNS0095610Silvery flower (tetraploid) 10.936
CNS0095611Silvery flower (tetraploid) 20.762
CNS0095612Silvery flower (tetraploid) 30.222
CNS0095613Golden flower (tetraploid) 10.771
CNS0095614Golden flower (tetraploid) 20.939
CNS0095615Golden flower (tetraploid) 30.554
CRA001975CRR073297Stem 127.135
CRR073298Stem 224.276
CRR073299Stem 322.383
CRR073300Leaf 125.717
CRR073301Leaf 225.372
CRR073302Leaf 320.143
CRR073303Juvenile bud 127.314
CRR073304Juvenile bud 222.178
CRR073305Juvenile bud 321.573
CRR073306Third green 17.175
CRR073307Third green 27.098
CRR073308Third green 36.574
CRR073309Second white 110.296
CRR073310Second white 29.914
CRR073311Second white 37.995
CRR073312Silver flowering 18.379
CRR073313Silver flowering 26.449
CRR073314Silver flowering 39.223
CRR073315Gold flowering 18.129
CRR073316Gold flowering 213.630
CRR073317Gold flowering 38.548
CRR073318Tawny withering 115.774
CRR073319Tawny withering 219.907
CRR073320Tawny withering 317.117