Gene detail

Detail information of GWHGAAZE023750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088395.1	1.28878E-88	PREDICTED: LOW QUALITY PROTEIN: probable phenylalanine--tRNA ligase alpha subunit [Sesamum indicum]
Swissprot	tr\|Q9T034\|SYFA_ARATH	9E-46	Probable phenylalanine--tRNA ligase alpha subunit
trEMBL	tr\|V7AEY8\|V7AEY8_PHAVU	2E-77	Uncharacterized protein {ECO:0000313\|EMBL:ESW03825.1}
TAIR10	AT4G39280.1	2E-40	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	24880689	24887270	-
GWHAAZE00000007	mRNA	24880689	24887270	-
GWHAAZE00000007	exon	24887124	24887270	-
GWHAAZE00000007	exon	24886637	24886759	-
GWHAAZE00000007	exon	24885556	24885756	-
GWHAAZE00000007	exon	24883832	24883924	-
GWHAAZE00000007	exon	24882739	24882795	-
GWHAAZE00000007	exon	24881243	24881298	-
GWHAAZE00000007	exon	24880942	24881034	-
GWHAAZE00000007	exon	24880689	24880791	-
GWHAAZE00000007	CDS	24887124	24887270	-
GWHAAZE00000007	CDS	24886637	24886759	-
GWHAAZE00000007	CDS	24885556	24885756	-
GWHAAZE00000007	CDS	24883832	24883924	-
GWHAAZE00000007	CDS	24882739	24882795	-
GWHAAZE00000007	CDS	24881243	24881298	-
GWHAAZE00000007	CDS	24880942	24881034	-
GWHAAZE00000007	CDS	24880689	24880791	-

Transcript Sequence
>GWHTAAZE023780 ATGGCAGAAGAAGCAGTGCTAGGGTTCCTCGAGAAGAACGATGAAATTTCAGATTCCGGTGAGTTTGCTGCCGATCAAGGCATCAATCACGATGAGATTGTCAATATCATCAAAAGTCTGAATGGTTTCAGACTTGTTGATGCTAAGGACATTAAGAGGGAGAGATGGGTACTCACTGATGAAGCAAAAAAATATGCTGCTGAAGGCAGTCCAGAAGTCCATTTCTTCTTGGCTGTCCCACCGGAGGGCATCTCAATAAACGAACTGACGAGAGGAAGGTTTGTGGAGATTCATATGAAGGAAATTAATGCAGAAGGAAGTGGGTATTCTACAGCAGTGGAAAATAAGATGAGCCATACTCGGTTGAAAAGAACAAATGGGCCTTATGCTCAGGTAACTGCACAACAGCCTCAGCAAAGCAGGTGTCAGTGGCAGGAAGCAGTTACTGGAGAGTGTCTTGCGAGAGTGGTGGGAAAGTTGGGAAGCTCAGTTTTCACAATAGGCCGGCCACAGGCATTAAAGAATAAATGGGTGGAGATTGGAAACGGGAAAGTGTCCAGGAAGGTTCAACATGTTGAGGACAAAGTTAAAGATTTGCTTACAAGTATACAAAATGAGGAGGTCATCAACCCAGAGGATATTGCTGCTCTCAAGCGCAGAAAGCTTATTTCTCCACAAATATGGAAAGGATACTCAGTAACAAAAGGTCCTAAGTATGCTCCAAAAAGAAAAAAATCTGCTACCGATTTAACAAGGGAGAATTTGCAAAGGGGTGAATGGAAGGAGTTGGAGTTTAAAGAATATAATTTCAGCGCTAAAGGTTTCCCTGGTGAAGGTGGCCATCTCCATCCATTGCTCAAGGCAAGAACATGA

Network for GWHGAAZE023750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0030

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18552.2	PheRS_DBD1	3	56	1.80E-09
PF18553.2	PheRS_DBD3	154	192	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01889	FARSA, pheS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.134
	SRR3591706	second leaf	1.787
	SRR3591707	mature leaf	1.112
	SRR3591708	Shoot apex	3.115
	SRR3591709	Stem	1.223
	SRR3591710	White floral bud	2.907
	SRR3591711	White flower	3.344
	SRR3591712	Green floral bud	3.280
	SRR3591713	Yellow flower	2.772
SRP173429	SRR8316895	Juvenile bud stage	9.892
	SRR8316896	Juvenile bud stage	16.220
	SRR8316897	Juvenile bud stage	0.241
	SRR8316894	Third green stage	5.254
	SRR8316900	Third green stage	16.592
	SRR8316901	Third green stage	13.439
	SRR8316898	Complete white stage	5.545
	SRR8316899	Complete white stage	15.544
	SRR8316903	Complete white stage	6.668
	SRR8316902	Silver flowering stage	4.724
	SRR8316904	Silver flowering stage	5.041
	SRR8316905	Silver flowering stage	3.099
	SRR8316906	Gold flowering stage	12.286
	SRR8316907	Gold flowering stage	12.534
	SRR8316908	Gold flowering stage	3.689
SRP132670	SRR6706286	Control	31.419
	SRR6706287	Light intensity 50%	30.284
	SRR6706288	Light intensity 20%	30.167
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.829
	CNS0095593	Slightly white alabastrum(diploid) 2	12.250
	CNS0095594	Slightly white alabastrum(diploid) 3	9.989
	CNS0095595	Whole white alabastrum(diploid) 2	14.429
	CNS0095596	Whole white alabastrum(diploid) 3	14.143
	CNS0095597	Whole white alabastrum(diploid) 4	15.767
	CNS0095598	Silvery flower (diploied) 1	7.871
	CNS0095599	Silvery flower (diploied) 2	8.921
	CNS0095600	Silvery flower (diploied) 3	13.677
	CNS0095601	Golden flower (diploid) 1	10.315
	CNS0095602	Golden flower (diploid) 2	15.194
	CNS0095603	Golden flower (diploid) 3	14.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.791
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.373
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.110
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.006
	CNS0095612	Silvery flower (tetraploid) 3	0.031
	CNS0095613	Golden flower (tetraploid) 1	0.206
	CNS0095614	Golden flower (tetraploid) 2	0.093
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	14.032
	CRR073298	Stem 2	14.106
	CRR073299	Stem 3	11.253
	CRR073300	Leaf 1	18.531
	CRR073301	Leaf 2	14.943
	CRR073302	Leaf 3	13.078
	CRR073303	Juvenile bud 1	12.250
	CRR073304	Juvenile bud 2	13.104
	CRR073305	Juvenile bud 3	11.406
	CRR073306	Third green 1	3.858
	CRR073307	Third green 2	3.930
	CRR073308	Third green 3	3.761
	CRR073309	Second white 1	4.029
	CRR073310	Second white 2	9.508
	CRR073311	Second white 3	3.776
	CRR073312	Silver flowering 1	2.821
	CRR073313	Silver flowering 2	5.651
	CRR073314	Silver flowering 3	4.056
	CRR073315	Gold flowering 1	5.002
	CRR073316	Gold flowering 2	6.245
	CRR073317	Gold flowering 3	4.510
	CRR073318	Tawny withering 1	6.490
	CRR073319	Tawny withering 2	8.938
	CRR073320	Tawny withering 3	6.606