Gene detail

Detail information of GWHGAAZE023751

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280239.1	0	PREDICTED: aminopeptidase M1 [Vitis vinifera]
COG	YP_006773912.1	5E-148	peptidase M1 membrane alanine aminopeptidase
Swissprot	tr\|Q8VZH2\|APM1_ARATH	0	Aminopeptidase M1
trEMBL	tr\|D7STT1\|D7STT1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20680.3}
TAIR10	AT4G33090.1	0	aminopeptidase M1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	24938974	24973704	+
GWHAAZE00000007	mRNA	24938974	24973704	+
GWHAAZE00000007	exon	24938974	24939189	+
GWHAAZE00000007	exon	24940842	24940987	+
GWHAAZE00000007	exon	24941735	24941837	+
GWHAAZE00000007	exon	24946768	24946954	+
GWHAAZE00000007	exon	24947438	24947465	+
GWHAAZE00000007	exon	24947573	24947660	+
GWHAAZE00000007	exon	24947780	24947884	+
GWHAAZE00000007	exon	24947970	24948086	+
GWHAAZE00000007	exon	24948208	24948321	+
GWHAAZE00000007	exon	24958934	24959116	+
GWHAAZE00000007	exon	24960139	24960319	+
GWHAAZE00000007	exon	24960401	24960522	+
GWHAAZE00000007	exon	24962557	24962615	+
GWHAAZE00000007	exon	24965871	24966048	+
GWHAAZE00000007	exon	24966135	24966249	+
GWHAAZE00000007	exon	24966707	24966774	+
GWHAAZE00000007	exon	24966880	24966954	+
GWHAAZE00000007	exon	24969573	24969650	+
GWHAAZE00000007	exon	24969753	24969917	+
GWHAAZE00000007	exon	24973410	24973704	+
GWHAAZE00000007	CDS	24938974	24939189	+
GWHAAZE00000007	CDS	24940842	24940987	+
GWHAAZE00000007	CDS	24941735	24941837	+
GWHAAZE00000007	CDS	24946768	24946954	+
GWHAAZE00000007	CDS	24947438	24947465	+
GWHAAZE00000007	CDS	24947573	24947660	+
GWHAAZE00000007	CDS	24947780	24947884	+
GWHAAZE00000007	CDS	24947970	24948086	+
GWHAAZE00000007	CDS	24948208	24948321	+
GWHAAZE00000007	CDS	24958934	24959116	+
GWHAAZE00000007	CDS	24960139	24960319	+
GWHAAZE00000007	CDS	24960401	24960522	+
GWHAAZE00000007	CDS	24962557	24962615	+
GWHAAZE00000007	CDS	24965871	24966048	+
GWHAAZE00000007	CDS	24966135	24966249	+
GWHAAZE00000007	CDS	24966707	24966774	+
GWHAAZE00000007	CDS	24966880	24966954	+
GWHAAZE00000007	CDS	24969573	24969650	+
GWHAAZE00000007	CDS	24969753	24969917	+
GWHAAZE00000007	CDS	24973410	24973424	+
GWHAAZE00000007	three_prime_UTR	24973425	24973704	+

Transcript Sequence
>GWHTAAZE023781 ATGGAGCAATTCAGAGGCAAGTCTAGACTACCAAACTTCCTAGTACCAAAACGCTACGATCTGAAGCTGAAACCTGACCTCACTGTCTGCAAATTCTCCGGTACCGTCGATATCTCCGTTGACGTAGTTGCCGATACCAGGTTCATCGTCCTTAACGCCGTTGAACTTTCGGTCGATCCCAACTCCGTGCGGTTTATAACCCAAATTGATTCAAAGGTTTTGGAGCCTTTGGGGGTTGAACTCTTTGAAGATGATGAGATCTTGGTGCTGGAGTTTGCTAAGAGTCTTCCTCTGGGGGTTGGGGTTTTATGTATTGCATTTGATGGAACCCTCAATGATAAAATGAAAGGGTTCTACAGAAGTACTTATGAGCATCATGGGGAGAAGAAGAATATGGCAGTGACACAGTTTGAATCTGCTGATGCTCGTCGTTGCTTTCCGTGTTGGGACGAACCTGCTTTTAAGGCTACATTCAAGATCACATTGGAAGTGCCAGCTGAACTCATAGCTCTTTCCAACATGCCAGTTGTTGAAGAAAAGGTGGATGGAAATCTTAAGACTGTTCACTATCTGGAATCCCCCATCATGTCTACATATTTAGTGGCTGCTGTTGTTGGATTTTTTGTTTATGTTGAAGATCATACACCTGATGGGGCTTCAAGCCTTCAACAGCATTTTTGGGCCATGGAGAATTATGGTCTAGTTACATGCCGGGAAATAGCTTTGCTCTACGATGATAAGCACTCTGCAGCTGCTAACAAGCAGAGGATTGCAATTGGTATAGCCCATGAACTTGCACACCAGTGGTTTGGTAATCTTGTGACGATGGAATGGTGGACCCATCTATGGTTAAACGAGGGATTTGCAACATGGGTGAGCTACTTAGCAACTGATATCTTGTTCCCAGAATGGAAAATTTGGACTCAGTTTCTCGACCAAATTACGGAGGGTCTTCGCCTGGATGGGCTTGCAGAGTCTCACCCCATTGAGGTAGAGATCAATCATGCTGGTGAAATTGATGAAATATTTGATGCAATTAGTTATAGAAAGGGGGCATCTGTCATTCGAATGCTGCAGAGCTATTTGGGTCCTGAATGTTTTCAGAGGGGACTTGCTTCATATATAAAGAGATTTGCTTGTTCAAATGCAAAGACTGAAGACTTATGGACCGTCCTTGAGGAGGAATCTGGTGAACCAGTGAACAAGCTAATGAGTTCATGGACAAAGCAGAAAGGTTATCCCGTCATTTCTGCTAAACTCAAAGATCAGAAACTGGAGATTGAGCAGGAATATTTGGGTTGCCCAATTTCTGAAGACGGCCTTTCCGATAAGAACAGATCAACATGTGCTTGGATAAAGCTTAATGTGGACCAAGCAGGTTTCTATAGGGTGAAATATGACGAGGGCCTTTTAACTAGGCTTAGATGTGCAATAGAGTGCAAAAGCATGTCTGCAACGGATAGATATGGTATTTTGGAGGATTCGTATGCCTTGTGCATGGCTTGCGAACAGTCTATGACCTCTTTGCTTACCTTGATGGGTGCTTACAAGGAGGAGCTTGATTACACTGTTCTTTCTAACTTGATTAGCTGGGATGGAAGGGGGCATGGAATCACTCAAGAGTGGATCTGTAGGGAGAGGGAGCAAAGGAGACTTGGTTGGGATCCTAAACAAGGGGAGAGCCACTTAGATTCCATGCTGAGAGGGGAGCTTTTGACTGCTCTGGCTCTCTTTGGACATGAGGTGACAATCAATGAAGCAAGCACGCATTTCAATGCATTCTTGGATGATAGAAATACGCCTCTTCTCCCTCCCGACTTAAGAAAGGTAGCATATGCTGCTGTAATGCAAAATGTGAGCACATCAAATAGAGTGGGTTATGAATCTCTTTTGAGAGTTTATAGAGAGACTGACCTGAGCCAGGAAAAGACACGGATTTTAGGTTCATTAGCATCTTGTCCAGATCCCAATATTATTCTGGAAGTTCTCAACTTCTTGCTGTCTTCTGAGGTTCGAAATCAAGATGCTGTGTTCGGACTTGCTGTTAGTAGGGAAGGATGTGAAATAGCTTGGAAATGGCTGAAGGACAATTGGGACCAGATCTATAAAACTTGGGGTTCAGGACGTCTCATAACCCACTTTATCAGTTCAATCGTGTCACCGTTCTCTTCGGAAATGAAGGTAAAAGAAGTAGAAGAATTTTTTGCAACCCAAACGAAGCCTTCATTTGCTAGGACCTTGAAGCAGAGCATTGAGCGAGTCCTTATTAATGCAAACTGGGTTCAGAGCATTCAGAAAGAGAAAGATCTTGCAGCAGCTGTAGAGGAGGAGACTTTGTTTTAGGGTTCTAAAACCAAGAGGGGTTAGCCATTAACATGCCAGACTGAAGTTAGATTTGATAATAAAAATGCACATATATTACACGGGTTTGTCTTAAGTTTATTGATCCGCGAGATTAAATACATTCATGCATATCTGCACATGTATGCAGGAAGAAAGTTTATTAACACTTGAACTTGTATCATACTCGATCTATATGCGTGTGCGTATTTGTACACAATGATAATATGTAGATTTTAAATATAAGTTAAGGTTATGTAATGGAGGTTGCTTGAGTGGTTAA

Network for GWHGAAZE023751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0133

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17900.2	Peptidase_M1_N	15	200	4.40E-48
PF01433.21	Peptidase_M1	227	407	3.60E-69
PF11838.9	ERAP1_C	451	754	4.10E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.303
	SRR3591706	second leaf	3.370
	SRR3591707	mature leaf	5.081
	SRR3591708	Shoot apex	5.707
	SRR3591709	Stem	10.919
	SRR3591710	White floral bud	4.643
	SRR3591711	White flower	5.188
	SRR3591712	Green floral bud	3.699
	SRR3591713	Yellow flower	4.214
SRP173429	SRR8316895	Juvenile bud stage	2.702
	SRR8316896	Juvenile bud stage	4.403
	SRR8316897	Juvenile bud stage	5.010
	SRR8316894	Third green stage	1.842
	SRR8316900	Third green stage	3.252
	SRR8316901	Third green stage	3.756
	SRR8316898	Complete white stage	0.637
	SRR8316899	Complete white stage	3.724
	SRR8316903	Complete white stage	1.975
	SRR8316902	Silver flowering stage	0.789
	SRR8316904	Silver flowering stage	1.338
	SRR8316905	Silver flowering stage	0.459
	SRR8316906	Gold flowering stage	1.679
	SRR8316907	Gold flowering stage	2.223
	SRR8316908	Gold flowering stage	4.780
SRP132670	SRR6706286	Control	2.556
	SRR6706287	Light intensity 50%	1.884
	SRR6706288	Light intensity 20%	2.140
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.043
	CNS0095593	Slightly white alabastrum(diploid) 2	3.040
	CNS0095594	Slightly white alabastrum(diploid) 3	4.098
	CNS0095595	Whole white alabastrum(diploid) 2	2.872
	CNS0095596	Whole white alabastrum(diploid) 3	2.790
	CNS0095597	Whole white alabastrum(diploid) 4	2.827
	CNS0095598	Silvery flower (diploied) 1	5.670
	CNS0095599	Silvery flower (diploied) 2	6.049
	CNS0095600	Silvery flower (diploied) 3	3.369
	CNS0095601	Golden flower (diploid) 1	6.127
	CNS0095602	Golden flower (diploid) 2	4.483
	CNS0095603	Golden flower (diploid) 3	4.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.543
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.606
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.382
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.938
	CNS0095610	Silvery flower (tetraploid) 1	12.653
	CNS0095611	Silvery flower (tetraploid) 2	12.478
	CNS0095612	Silvery flower (tetraploid) 3	9.047
	CNS0095613	Golden flower (tetraploid) 1	6.575
	CNS0095614	Golden flower (tetraploid) 2	9.940
	CNS0095615	Golden flower (tetraploid) 3	4.840
CRA001975	CRR073297	Stem 1	3.177
	CRR073298	Stem 2	3.401
	CRR073299	Stem 3	2.722
	CRR073300	Leaf 1	2.394
	CRR073301	Leaf 2	3.068
	CRR073302	Leaf 3	2.196
	CRR073303	Juvenile bud 1	1.954
	CRR073304	Juvenile bud 2	1.403
	CRR073305	Juvenile bud 3	3.977
	CRR073306	Third green 1	0.500
	CRR073307	Third green 2	0.452
	CRR073308	Third green 3	0.422
	CRR073309	Second white 1	0.318
	CRR073310	Second white 2	0.397
	CRR073311	Second white 3	0.446
	CRR073312	Silver flowering 1	0.358
	CRR073313	Silver flowering 2	0.176
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	2.877
	CRR073316	Gold flowering 2	5.715
	CRR073317	Gold flowering 3	2.600
	CRR073318	Tawny withering 1	3.180
	CRR073319	Tawny withering 2	3.243
	CRR073320	Tawny withering 3	4.292