Gene detail

Detail information of GWHGAAZE023760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280239.1	4.4968E-110	PREDICTED: aminopeptidase M1 [Vitis vinifera]
COG	YP_875417.1	4E-29	aminopeptidase N
Swissprot	tr\|Q8VZH2\|APM1_ARATH	1E-99	Aminopeptidase M1
trEMBL	tr\|D7STT1\|D7STT1_VITVI	2E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20680.3}
TAIR10	AT4G33090.1	4E-86	aminopeptidase M1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	25196874	25203202	-
GWHAAZE00000007	mRNA	25196874	25203202	-
GWHAAZE00000007	exon	25202897	25203202	-
GWHAAZE00000007	exon	25201664	25201973	-
GWHAAZE00000007	exon	25201461	25201582	-
GWHAAZE00000007	exon	25196874	25197011	-
GWHAAZE00000007	CDS	25202897	25203202	-
GWHAAZE00000007	CDS	25201664	25201973	-
GWHAAZE00000007	CDS	25201461	25201582	-
GWHAAZE00000007	CDS	25196874	25197011	-

Transcript Sequence
>GWHTAAZE023790 ATGACTATGTTGCTTAAAAAGAAGCATGCTATTGCGTACTTCTCAGTTAATCACTCCTTTCCAGTATTAATTTCTACTATTATCTTTATAGATAATGTAGTTTTTGACCTTTTGGTACATTTAGAGGGACTTGCTTCATATATAAAGAGATTTGCTTGTTCAAATGCAAAGACTGAAGACTTATGGACCGTCCTTGAGGAGGAATCTGGTGAACCAGTGAACAAGCTAATGAGTTCATGGACAAAGCAGAAAGGTTATCCCGTCATTTCTGCTAAACTCAAAGATCAGAAACTGGAGTTTGAGCAGTCACAATTCTTGTTGAGTGGTTCACATGGGGATGGGCAATGGATTGTTCCAATAACACTATGTAGTGGCTCATATGATGCTCGTCGCAACTTTTTATTACACACAAAATCCGAAGCTCATGATATTAAGGAATATTTGGGTTGCCCAATTTCTGAAGACGGCCTTTCCGATAAGAACAGATCAACATGTGCTTGGATAAAGCTTAATGTGGACCAAGCAGGTTTCTATAGGGTGAAATATGACGAGGGCCTTTTAACTAGGCTTAGATGTGCAATAGAGTGCAAAAGCATGTCTGCAACCGATAGATATGGTATTTTGGAGGATTCGTATGCCTTGTGCATGGCTTGCGAACAGTCTATGACCTCTTTGCTTACCTTGATGGGTGCTTACAAGGAGGAGCTTGATTACACTGTTCTTTCTAACTTGATTAGCCTTGCTCCTCATCCTAATCCTGTTTCCCTCCCACAGATAAGTTATAAGGTTGAAAAAATTGTGGCTGATGCTGCTCCTGAATTACTGGATCGCATCAAACTGTTTTTGATTAATCTTTTCCAATATCCTGTGGCGTAA

Network for GWHGAAZE023760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0133

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11838.9	ERAP1_C	167	246	6.70E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.682
	SRR3591706	second leaf	4.259
	SRR3591707	mature leaf	2.614
	SRR3591708	Shoot apex	4.480
	SRR3591709	Stem	8.282
	SRR3591710	White floral bud	2.176
	SRR3591711	White flower	1.611
	SRR3591712	Green floral bud	1.372
	SRR3591713	Yellow flower	2.031
SRP173429	SRR8316895	Juvenile bud stage	2.832
	SRR8316896	Juvenile bud stage	3.990
	SRR8316897	Juvenile bud stage	4.367
	SRR8316894	Third green stage	2.241
	SRR8316900	Third green stage	2.497
	SRR8316901	Third green stage	2.711
	SRR8316898	Complete white stage	0.803
	SRR8316899	Complete white stage	4.814
	SRR8316903	Complete white stage	2.014
	SRR8316902	Silver flowering stage	0.426
	SRR8316904	Silver flowering stage	0.869
	SRR8316905	Silver flowering stage	0.174
	SRR8316906	Gold flowering stage	1.246
	SRR8316907	Gold flowering stage	3.005
	SRR8316908	Gold flowering stage	4.813
SRP132670	SRR6706286	Control	0.806
	SRR6706287	Light intensity 50%	0.900
	SRR6706288	Light intensity 20%	1.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.853
	CNS0095593	Slightly white alabastrum(diploid) 2	3.292
	CNS0095594	Slightly white alabastrum(diploid) 3	1.992
	CNS0095595	Whole white alabastrum(diploid) 2	4.189
	CNS0095596	Whole white alabastrum(diploid) 3	3.066
	CNS0095597	Whole white alabastrum(diploid) 4	2.408
	CNS0095598	Silvery flower (diploied) 1	4.327
	CNS0095599	Silvery flower (diploied) 2	5.265
	CNS0095600	Silvery flower (diploied) 3	2.872
	CNS0095601	Golden flower (diploid) 1	4.595
	CNS0095602	Golden flower (diploid) 2	4.781
	CNS0095603	Golden flower (diploid) 3	3.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.271
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.608
	CNS0095610	Silvery flower (tetraploid) 1	10.798
	CNS0095611	Silvery flower (tetraploid) 2	10.970
	CNS0095612	Silvery flower (tetraploid) 3	6.897
	CNS0095613	Golden flower (tetraploid) 1	4.674
	CNS0095614	Golden flower (tetraploid) 2	7.804
	CNS0095615	Golden flower (tetraploid) 3	3.589
CRA001975	CRR073297	Stem 1	4.191
	CRR073298	Stem 2	3.485
	CRR073299	Stem 3	4.110
	CRR073300	Leaf 1	2.349
	CRR073301	Leaf 2	1.766
	CRR073302	Leaf 3	3.773
	CRR073303	Juvenile bud 1	1.921
	CRR073304	Juvenile bud 2	1.689
	CRR073305	Juvenile bud 3	3.929
	CRR073306	Third green 1	0.432
	CRR073307	Third green 2	0.446
	CRR073308	Third green 3	0.325
	CRR073309	Second white 1	0.678
	CRR073310	Second white 2	0.082
	CRR073311	Second white 3	0.475
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.053
	CRR073314	Silver flowering 3	0.114
	CRR073315	Gold flowering 1	2.489
	CRR073316	Gold flowering 2	2.940
	CRR073317	Gold flowering 3	2.536
	CRR073318	Tawny withering 1	3.086
	CRR073319	Tawny withering 2	1.316
	CRR073320	Tawny withering 3	1.948