Gene detail

Detail information of GWHGAAZE023767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002519912.1	5.23003E-96	pectin acetylesterase, putative [Ricinus communis]
trEMBL	tr\|B9S1P7\|B9S1P7_RICCO	2E-96	Pectin acetylesterase, putative {ECO:0000313\|EMBL:EEF42516.1}
TAIR10	AT4G19420.1	3E-74	Pectinacetylesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	25357237	25360134	+
GWHAAZE00000007	mRNA	25357237	25360134	+
GWHAAZE00000007	exon	25357237	25357433	+
GWHAAZE00000007	exon	25357555	25357637	+
GWHAAZE00000007	exon	25357761	25357893	+
GWHAAZE00000007	exon	25357979	25358062	+
GWHAAZE00000007	exon	25358504	25358621	+
GWHAAZE00000007	exon	25358743	25358806	+
GWHAAZE00000007	exon	25358943	25358996	+
GWHAAZE00000007	exon	25359276	25359381	+
GWHAAZE00000007	exon	25359725	25359861	+
GWHAAZE00000007	exon	25359994	25360134	+
GWHAAZE00000007	five_prime_UTR	25357237	25357318	+
GWHAAZE00000007	CDS	25357319	25357433	+
GWHAAZE00000007	CDS	25357555	25357637	+
GWHAAZE00000007	CDS	25357761	25357893	+
GWHAAZE00000007	CDS	25357979	25358062	+
GWHAAZE00000007	CDS	25358504	25358621	+
GWHAAZE00000007	CDS	25358743	25358806	+
GWHAAZE00000007	CDS	25358943	25358996	+
GWHAAZE00000007	CDS	25359276	25359381	+
GWHAAZE00000007	CDS	25359725	25359861	+
GWHAAZE00000007	CDS	25359994	25360134	+

Transcript Sequence
>GWHTAAZE023797 ATACATAGGTGTAGTTGCATTGTTCAGCTCATTGCATTCTCATCTCTATCTCTCTTGTTCACTGCGTTCTCATCTCTCTCTAATGGCTAGTGCAAGATTATCTTTGTTTCTTGTTTGTGTTGCTTTCTTCATGCTGAAAACTGCAGTTTCAAGTGTGCCTCTTACTCGTGTTAAAAGCGCTGTGGCAAAGGGTGCAGTTTGTTTAGACGGTAGTCCACCAGCTTACCAGTTTGATAAAGGCTTTGGAGAAGGAGCCAACAGTTGGTTGCTTAACCTAGAGGGAGGAGAGTGGTGCGGAACACCTAAAGACTGCATGAAGCGTACGAATTATCCTAACGGTCTGGGTTCAAGTTTTCGCATGACAAAACATAGGTTTACAGGAATTTTGAGCAAGAAGCAGATCGAAAACCCGAATTTTTATAACTGGAATAGGATTTACGTCAGATACTGCGACGGATCCTCATTCACCGGAGATTCGGAAGGAGTCTATCAGGCAAGCTTCGGAAACTCAGCAGGTGGTTTAGCTTCAATACTACACTGCGATAGATTCCGAGCATTTCTACCCGCGACTACAATGGTGAAATGCCTTTCAGACGGAGGATATTTTATGCACGCGAGAGATATTTCCGGGAAATATCATTTTGAAGAAGTAATGTTTGATAGGGTGGTGCGCTTACATGGATCAATCAAGAATTTGCCTCGGGCATGCACTTTGAAGATGAAACGAGGCTTGATTCCGCGCATTTTGGCGTTAACAAATATTAATGTTGGTCGTTCCTGGGTGGGATGCCAAAATAATATGACGAAATGCTCTTCGAGTCAACTCAAAATTTTGCAAGATTTTAGGCATGAGTTTGTGCACGGAGTACTGATTGGGTTGCAGAACAACCCATCGGGTGGATATTTCATTAATACATGCTATGCTCATTGCCAATCTCTACATGAGAGGAAATGGCTCTTAGATATTCATTCAAGGTCAATTTCAGACGCTGTTGGAGACTGGTATTATGATAGAGGTGTTGTACAACTAATAGATCACCAAAATCGATGGCCACATGAATGTGTCTTGGATCCAGGAGAACCCAATCGTAAAAATAATTATACGTGGCCGGGTTAA

Network for GWHGAAZE023767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03283.14	PAE	20	135	1.50E-45
PF03283.14	PAE	141	214	3.50E-21
PF03283.14	PAE	218	312	2.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.256
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.120
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.344
	SRR8316896	Juvenile bud stage	0.084
	SRR8316897	Juvenile bud stage	0.060
	SRR8316894	Third green stage	0.326
	SRR8316900	Third green stage	0.197
	SRR8316901	Third green stage	0.158
	SRR8316898	Complete white stage	0.576
	SRR8316899	Complete white stage	1.402
	SRR8316903	Complete white stage	0.776
	SRR8316902	Silver flowering stage	1.253
	SRR8316904	Silver flowering stage	3.556
	SRR8316905	Silver flowering stage	0.743
	SRR8316906	Gold flowering stage	1.466
	SRR8316907	Gold flowering stage	1.773
	SRR8316908	Gold flowering stage	4.065
SRP132670	SRR6706286	Control	0.170
	SRR6706287	Light intensity 50%	0.243
	SRR6706288	Light intensity 20%	0.443
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.447
	CNS0095593	Slightly white alabastrum(diploid) 2	0.237
	CNS0095594	Slightly white alabastrum(diploid) 3	0.181
	CNS0095595	Whole white alabastrum(diploid) 2	0.262
	CNS0095596	Whole white alabastrum(diploid) 3	0.525
	CNS0095597	Whole white alabastrum(diploid) 4	0.145
	CNS0095598	Silvery flower (diploied) 1	1.969
	CNS0095599	Silvery flower (diploied) 2	1.871
	CNS0095600	Silvery flower (diploied) 3	1.222
	CNS0095601	Golden flower (diploid) 1	1.005
	CNS0095602	Golden flower (diploid) 2	0.232
	CNS0095603	Golden flower (diploid) 3	0.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.247
	CNS0095610	Silvery flower (tetraploid) 1	0.201
	CNS0095611	Silvery flower (tetraploid) 2	0.077
	CNS0095612	Silvery flower (tetraploid) 3	0.024
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.107
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.063
	CRR073298	Stem 2	0.052
	CRR073299	Stem 3	0.180
	CRR073300	Leaf 1	0.074
	CRR073301	Leaf 2	0.038
	CRR073302	Leaf 3	0.157
	CRR073303	Juvenile bud 1	0.030
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.416
	CRR073306	Third green 1	0.120
	CRR073307	Third green 2	1.352
	CRR073308	Third green 3	0.923
	CRR073309	Second white 1	0.845
	CRR073310	Second white 2	2.989
	CRR073311	Second white 3	0.139
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.953
	CRR073314	Silver flowering 3	0.070
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.139
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.100