Detail information of GWHGAAZE023798


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009131249.10PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Brassica rapa]
trEMBLtr|A0A078C601|A0A078C601_BRANA0BnaC03g05220D protein {ECO:0000313|EMBL:CDX70438.1}
TAIR10AT5G11980.11E-135conserved oligomeric Golgi complex component-related / COG complex component-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2642048826429460-
GWHAAZE00000007mRNA2642048826429460-
GWHAAZE00000007exon2642945326429460-
GWHAAZE00000007exon2642883726428914-
GWHAAZE00000007exon2642859226428685-
GWHAAZE00000007exon2642814826428222-
GWHAAZE00000007exon2642774726428043-
GWHAAZE00000007exon2642688626426953-
GWHAAZE00000007exon2642673926426793-
GWHAAZE00000007exon2642548326425621-
GWHAAZE00000007exon2642360926423785-
GWHAAZE00000007exon2642159126421633-
GWHAAZE00000007exon2642097626421066-
GWHAAZE00000007exon2642048826420790-
GWHAAZE00000007CDS2642945326429460-
GWHAAZE00000007CDS2642883726428914-
GWHAAZE00000007CDS2642859226428685-
GWHAAZE00000007CDS2642814826428222-
GWHAAZE00000007CDS2642774726428043-
GWHAAZE00000007CDS2642688626426953-
GWHAAZE00000007CDS2642673926426793-
GWHAAZE00000007CDS2642548326425621-
GWHAAZE00000007CDS2642360926423785-
GWHAAZE00000007CDS2642159126421633-
GWHAAZE00000007CDS2642097626421066-
GWHAAZE00000007CDS2642048826420790-
Transcript Sequence

Network for GWHGAAZE023798

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0207


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04124.13Dor112221.20E-95
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0017119cellular_componentGolgi transport complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.861
SRR3591706second leaf1.099
SRR3591707mature leaf0.381
SRR3591708Shoot apex1.155
SRR3591709Stem0.647
SRR3591710White floral bud0.085
SRR3591711White flower0.000
SRR3591712Green floral bud0.111
SRR3591713Yellow flower0.226
SRP173429 SRR8316895Juvenile bud stage 2.914
SRR8316896Juvenile bud stage 4.599
SRR8316897Juvenile bud stage 1.948
SRR8316894Third green stage 2.036
SRR8316900Third green stage 4.446
SRR8316901Third green stage 3.577
SRR8316898Complete white stage 1.321
SRR8316899Complete white stage 4.162
SRR8316903Complete white stage 1.179
SRR8316902Silver flowering stage0.976
SRR8316904Silver flowering stage1.012
SRR8316905Silver flowering stage0.481
SRR8316906Gold flowering stage 0.986
SRR8316907Gold flowering stage 0.589
SRR8316908Gold flowering stage 1.162
SRP132670SRR6706286Control1.968
SRR6706287Light intensity 50%2.470
SRR6706288Light intensity 20%2.601
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.027
CNS0095593Slightly white alabastrum(diploid) 24.225
CNS0095594Slightly white alabastrum(diploid) 34.043
CNS0095595Whole white alabastrum(diploid) 23.520
CNS0095596Whole white alabastrum(diploid) 36.428
CNS0095597Whole white alabastrum(diploid) 44.687
CNS0095598Silvery flower (diploied) 13.848
CNS0095599Silvery flower (diploied) 22.602
CNS0095600Silvery flower (diploied) 31.117
CNS0095601Golden flower (diploid) 13.316
CNS0095602Golden flower (diploid) 21.113
CNS0095603Golden flower (diploid) 31.463
CNS0095604Slightly white alabastrum(tetraploid) 10.217
CNS0095605Slightly white alabastrum(tetraploid) 20.047
CNS0095606Slightly white alabastrum(tetraploid) 30.455
CNS0095607Whole white alabastrum(tetraploid) 10.078
CNS0095608Whole white alabastrum(tetraploid) 20.032
CNS0095609Whole white alabastrum(tetraploid) 30.261
CNS0095610Silvery flower (tetraploid) 10.273
CNS0095611Silvery flower (tetraploid) 20.351
CNS0095612Silvery flower (tetraploid) 30.517
CNS0095613Golden flower (tetraploid) 10.065
CNS0095614Golden flower (tetraploid) 20.125
CNS0095615Golden flower (tetraploid) 30.038
CRA001975CRR073297Stem 12.929
CRR073298Stem 23.664
CRR073299Stem 31.719
CRR073300Leaf 14.008
CRR073301Leaf 22.408
CRR073302Leaf 31.536
CRR073303Juvenile bud 11.887
CRR073304Juvenile bud 20.800
CRR073305Juvenile bud 31.239
CRR073306Third green 10.246
CRR073307Third green 20.279
CRR073308Third green 30.435
CRR073309Second white 10.244
CRR073310Second white 20.862
CRR073311Second white 30.155
CRR073312Silver flowering 10.252
CRR073313Silver flowering 20.074
CRR073314Silver flowering 30.071
CRR073315Gold flowering 10.445
CRR073316Gold flowering 20.758
CRR073317Gold flowering 30.173
CRR073318Tawny withering 12.332
CRR073319Tawny withering 20.926
CRR073320Tawny withering 32.019