Gene detail

Detail information of GWHGAAZE023802

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009799324.1	9.8307E-125	PREDICTED: heat shock factor protein HSF30 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|P41152\|HSF30_SOLPE	8E-121	Heat shock factor protein HSF30
trEMBL	tr\|J9XU22\|J9XU22_CAPAN	2E-120	Heat stress transcription factor A2 {ECO:0000313\|EMBL:AFS33109.1}
TAIR10	AT2G26150.1	3E-90	heat shock transcription factor A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	26545336	26548172	-
GWHAAZE00000007	mRNA	26545336	26548172	-
GWHAAZE00000007	exon	26547765	26548172	-
GWHAAZE00000007	exon	26546090	26546522	-
GWHAAZE00000007	exon	26545844	26546001	-
GWHAAZE00000007	exon	26545597	26545637	-
GWHAAZE00000007	exon	26545336	26545456	-
GWHAAZE00000007	five_prime_UTR	26548068	26548172	-
GWHAAZE00000007	CDS	26547765	26548067	-
GWHAAZE00000007	CDS	26546090	26546522	-
GWHAAZE00000007	CDS	26545844	26546001	-
GWHAAZE00000007	CDS	26545597	26545637	-
GWHAAZE00000007	CDS	26545336	26545456	-

Transcript Sequence
>GWHTAAZE023832 CCAAAATCTTACACCATCCCTCCAAATTACAATCAAAACCCAGAAAAACCCACAAGTTCAATTTCAATTTTGGATCATAAAAATCAAAACACAGACTATATTAAAATGGATCAAGAATTGAGGGTGAAAGTGAAGGAAGAAGAAGCAACAACGGTTTCATTTGCTATTGGTTCATCTTCAACAACTTCACCAAAGCCAATGGAGGGTTTACATGAAGTGGGTCCACCTCCATTTTTGATAAAAACATATGATATGGTTGAAGACCCATCTACTGATTCAGTTGTATCTTGGAGTTTGGGTAGGAATAGCTTCATTGTTTGGGATTCTCACGAATTCTCCACCACTCTGCTTCCCAAGTATTTCAAGCACAGTAATTTTTCAAGCTTCATTCGCCAGCTCAATACTTATGGTTTCCGAAAGGTGGATCCAGACCGATGGGAATTTGCAAACCAGGGGTTTTTGGGCGGTCAAAAGCATCTTTTAAAGAACATAAAGAGGAGAAGAAATGTCTCGCAAACCACCCAACAACAAGGTGGACCTTGCGTTGAATTAGGCCATTATGGGATCGAAGAAGAGCTCGAAAGACTAAAAAGAGACCGAAACTTATTAATGACCGAAGTCATAAAGCTAAGACAGCAACAACAGAGCTCAAAAGACCAAGTAATTGCAATGGAAAACAGAATCCGAAACACGGAAACCAAGCATCAACAGATGATGAACTTCCTCGCCAAAGCCTTCACAAACCCTGCTTTTATACAACAATGCATTGATAAACCCAAGGAGAGAAGGGCACAGAAACCAATCGAGATCGGGCAAAAACGGAGACTAACTATGACTCCGAAAGGGACTATTTGGGAAGACTTTCTAAATGAGGAACTTGTGAGTGGTCACGAAGAGGAAGAATTCTTTGTGGGTGATGAACCGGCTGTTGATTTAGAGGTTGATGTCGAAGGTATGGTTGCTAAATTCCCGGATTGGGGTGAGAACTTGCAAGAACTTGGGATAGTGAAGGTTGCAAGGAGGCCAAGTTGTTTCTTTCTGCGAAATCGAGTGAAGAATTCTGAGACGGACTTGGAGGGAGTTCATCAATGGTTCCGGAGTTGCGCAGAATTACTTGGTTTGCCTAAGCTAGAGAGTCTATATCCAGTGGGAAGACTGTGA

Network for GWHGAAZE023802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	43	132	8.90E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.303
	SRR3591706	second leaf	4.088
	SRR3591707	mature leaf	49.760
	SRR3591708	Shoot apex	10.499
	SRR3591709	Stem	25.878
	SRR3591710	White floral bud	6.549
	SRR3591711	White flower	9.999
	SRR3591712	Green floral bud	8.354
	SRR3591713	Yellow flower	2.553
SRP173429	SRR8316895	Juvenile bud stage	80.011
	SRR8316896	Juvenile bud stage	239.224
	SRR8316897	Juvenile bud stage	108.830
	SRR8316894	Third green stage	25.613
	SRR8316900	Third green stage	91.318
	SRR8316901	Third green stage	114.172
	SRR8316898	Complete white stage	11.894
	SRR8316899	Complete white stage	65.167
	SRR8316903	Complete white stage	20.537
	SRR8316902	Silver flowering stage	48.849
	SRR8316904	Silver flowering stage	50.627
	SRR8316905	Silver flowering stage	33.367
	SRR8316906	Gold flowering stage	97.138
	SRR8316907	Gold flowering stage	75.500
	SRR8316908	Gold flowering stage	52.362
SRP132670	SRR6706286	Control	30.961
	SRR6706287	Light intensity 50%	37.240
	SRR6706288	Light intensity 20%	31.935
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.719
	CNS0095593	Slightly white alabastrum(diploid) 2	45.403
	CNS0095594	Slightly white alabastrum(diploid) 3	40.083
	CNS0095595	Whole white alabastrum(diploid) 2	35.807
	CNS0095596	Whole white alabastrum(diploid) 3	29.111
	CNS0095597	Whole white alabastrum(diploid) 4	32.668
	CNS0095598	Silvery flower (diploied) 1	44.034
	CNS0095599	Silvery flower (diploied) 2	143.098
	CNS0095600	Silvery flower (diploied) 3	62.900
	CNS0095601	Golden flower (diploid) 1	196.039
	CNS0095602	Golden flower (diploid) 2	47.576
	CNS0095603	Golden flower (diploid) 3	46.421
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.251
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.289
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.961
	CNS0095610	Silvery flower (tetraploid) 1	21.785
	CNS0095611	Silvery flower (tetraploid) 2	21.476
	CNS0095612	Silvery flower (tetraploid) 3	67.344
	CNS0095613	Golden flower (tetraploid) 1	12.790
	CNS0095614	Golden flower (tetraploid) 2	23.003
	CNS0095615	Golden flower (tetraploid) 3	3.127
CRA001975	CRR073297	Stem 1	8.390
	CRR073298	Stem 2	5.135
	CRR073299	Stem 3	0.869
	CRR073300	Leaf 1	11.758
	CRR073301	Leaf 2	9.550
	CRR073302	Leaf 3	1.142
	CRR073303	Juvenile bud 1	2.008
	CRR073304	Juvenile bud 2	0.268
	CRR073305	Juvenile bud 3	1.103
	CRR073306	Third green 1	0.286
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.085
	CRR073309	Second white 1	0.936
	CRR073310	Second white 2	1.375
	CRR073311	Second white 3	1.326
	CRR073312	Silver flowering 1	0.689
	CRR073313	Silver flowering 2	0.447
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.347
	CRR073316	Gold flowering 2	5.900
	CRR073317	Gold flowering 3	0.540
	CRR073318	Tawny withering 1	3.321
	CRR073319	Tawny withering 2	5.705
	CRR073320	Tawny withering 3	4.399