Gene detail

Detail information of GWHGAAZE023819

Functional Annotation

Database	Orthologs	Annotation
Nr	P49361.1GCSPA_FLAPR	RecName: Full=Glycine dehydrogenase (decarboxylating) A, mitochondrial; AltName: Full=Glycine cleavage system P protein A; AltName: Full=Glycine decarboxylase A; AltName: Full=Glycine dehydrogenase (aminomethyl-transferring) A; Flags: Precursor [Flaveria pringlei]
COG	YP_001658916.1	glycine dehydrogenase
Swissprot	tr\|P49361\|GCSPA_FLAPR	Glycine dehydrogenase (decarboxylating) A, mitochondrial (Precursor)
trEMBL	tr\|A0A061GRY8\|A0A061GRY8_THECC	Glycine decarboxylase P-protein 1 {ECO:0000313\|EMBL:EOY29899.1}
TAIR10	AT4G33010.2	glycine decarboxylase P-protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27175032	27181256	+
GWHAAZE00000007	mRNA	27175032	27181256	+
GWHAAZE00000007	exon	27175032	27176148	+
GWHAAZE00000007	exon	27176231	27176286	+
GWHAAZE00000007	exon	27176379	27176624	+
GWHAAZE00000007	exon	27177193	27177270	+
GWHAAZE00000007	exon	27177373	27177479	+
GWHAAZE00000007	exon	27177559	27177754	+
GWHAAZE00000007	exon	27178785	27178910	+
GWHAAZE00000007	exon	27179645	27179830	+
GWHAAZE00000007	exon	27179912	27180025	+
GWHAAZE00000007	exon	27181101	27181256	+
GWHAAZE00000007	CDS	27175032	27176148	+
GWHAAZE00000007	CDS	27176231	27176286	+
GWHAAZE00000007	CDS	27176379	27176624	+
GWHAAZE00000007	CDS	27177193	27177270	+
GWHAAZE00000007	CDS	27177373	27177479	+
GWHAAZE00000007	CDS	27177559	27177754	+
GWHAAZE00000007	CDS	27178785	27178910	+
GWHAAZE00000007	CDS	27179645	27179830	+
GWHAAZE00000007	CDS	27179912	27180025	+
GWHAAZE00000007	CDS	27181101	27181256	+

Transcript Sequence
>GWHTAAZE023849 ATGGAACGTGCTCGGCGGCTGGCCAACCGGGCAATTCTCAGGCGACTGATGTCGGAGTCTAAGCAGCTCCGGCAGGCTGAGTTGCCGCCGAGTTCTTCGTCTGCCCCGGTTTTGTATACGCCGTCGAGGTATGTTTCTTCCCTGTCTGGTTATGTGGGGAGAATTACTGGTAGATCAGGTGTTTGTAGAAATGTCTCACAGAATGTCGAAGGGTTTGGTGGGATTGGTTCTCAAGTTAGATCCATATCTGTTGATGCATTGAAACCCAGTGACACTTTCCCTCGTCGACATAACTCGGCCACACCCGAGGACAAAACAAAAATGTCTGAGTTTTGTGGGTTTGGGAGTCTTGATTCGTTAATCGATGCAACTGTACCTAAATCAATTCGGTTACAATCAATGAAGTTTTCAAAGTTTGATGATGGGTTAACTGAGAGTCAAATGATTGAGCACATGCAAAGTTTAGCTTCTAAGAATAAGGTTTTCAAGTCTTTTATTGGGATGGGGTATTATAACACCTCTGTTCCCCCTGTGATTTTGAGGAACATTATGGAGAATCCGGGTTGGTATACCCAGTATACTCCGTACCAGGCCGAGATAGCTCAAGGGCGTCTCGAGTCTTTGCTTAATTACCAGACCATGATTTCGGATCTTACTGGCCTCCCCATGTCGAACGCTTCCTTGCTTGATGAAGGAACCGCTGCGGCCGAGGCAATGGCCATGTGCAATAACATTGTGAAGGGAAAGAAGAAAACTTTCATTATTGCTAGTAACTGTCACCCGCAGACAATCGATGTTTGCAAGACTAGAGCGGATGGTTTCGAGATTAAGGTAGTTAAGGCTGATCTCAAGGACTTTGATTACAAGTCGGGTGATGTTTGTGGTGTTTTGGTCCAGTATCCGGGTACCGAAGGTGAAATTTTGGACTATGGGGAGTTTATTAAGAACGCCCACGCAAATGGGGTGAAGGTTGTTATGGCGACCGATCTTTTGGCTTTGACCATGTTGAAGCCTCCGGTGAGTTTGGGGCCGATATTGTTGTCGGTTCGGCTCAGAGGTTTGGCGTTCCAATGGGTTATGGTGGTCCTCATGCAGCGTTCCTCGCTACATCCCACGAACACGGGAGCAACATATCCGAGGGACAAGGCTACAAGCAACATCTGCACTGCTCAGGCACTTCTTGCAAACATGGCTGCTATGTACGCCGTTTATCATGGACCCGAAGGCCTCAAAACTATTGCCCAACGCGTCCACGGTCTTGCAGGCACATTTGCTGCAGGACTCAAGAAACTTGGAACAGTAGAAGTCCAGGGGCTTCCCTTCTTTGACACGGTGAAGATTACATGTGCTGATTCCCAGAAAATTGCAGATGCTGCTTACAAGAGTGAGATGAATCTCCGAATTCTGGACAAGAACACTATCACTGTTTCTTTTGATGAAACCACGACCCTAGAGGATGTAGATGAGCTATTCAAGGTGTTTGCTTCTGGGAAGCCTGTCCCATTCACTGCTGCATCTATTGCACCAGAGGTTAAGGATATTCTTCCCCCCAGGGCTTGTGAGAGAGAGCCCATATCTGACTCACCCAATTTTCAACTCGTATGGTACCATAACGAGCATGAGCTTCTCAGATACATTCATAAGTTGCAATCAAAGGATCTTTCCTTGGTCCACAGTATGATCCCGTTGGGATCTTGTACAATGAAGTTGAACGCAACGACAGAGATGATGCCTGTTACATGGCCAAGTTTTGCAAACATGCACCCTTTTGCCCCTACTGAACAGGCTGAGGGCTATCAGGAAATGTTCACTAATTTGGGGGACCTGTTGTGTACCATCACTGGCTTCGATTCGTTCTCTTTGCAACCCAATGCTGGTGCTGCTGGTGAGTATGCTGGGCTGATGGTTATCCGTGCATATCATAAGGCAAGAGGAGACCATCATCGCAATGCTTGCATTATACCTGTTTCTGCACATGGAACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTATTACTGTTGGAACTGATGCCAAGGGAAACATCAATATTGAGGAGTTAAGAAAAGCCGCTGAAGCAAACAAGGATAACCTGTCTGCCCTTATGGTTACATATCCATCTACACATGGAGTTTATGAGGAAGGTATTGATGAGATCTGTAAGATAATTCATGACAATGGTGGTCAAGTTTACATGGACGGAGCCAACATGAATGCTCAGGTTGGTCTGACGAGTCCAGGCTGGATCGGTGCTGATGTTTGCCATCTCAATCTCCACAAAACTTTCTGCATTCCCCATGGTGGAGGCGGTCCTGGCATGGGTCCTATTGGTGTCAAGAAACACTTGGCACCGATTTGCCATCTCACCCTGTGGTAA

Network for GWHGAAZE023819

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02347.17	GDC-P	96	343	3.20E-96
PF02347.17	GDC-P	380	494	8.20E-34
PF02347.17	GDC-P	533	784	6.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00281	GLDC, gcvP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0006546	biological_process	glycine catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0004375	molecular_function	glycine dehydrogenase (decarboxylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	122.494
	SRR3591706	second leaf	454.282
	SRR3591707	mature leaf	806.517
	SRR3591708	Shoot apex	150.772
	SRR3591709	Stem	270.987
	SRR3591710	White floral bud	45.726
	SRR3591711	White flower	46.464
	SRR3591712	Green floral bud	49.438
	SRR3591713	Yellow flower	32.313
SRP173429	SRR8316895	Juvenile bud stage	81.447
	SRR8316896	Juvenile bud stage	85.432
	SRR8316897	Juvenile bud stage	44.621
	SRR8316894	Third green stage	29.596
	SRR8316900	Third green stage	66.586
	SRR8316901	Third green stage	62.841
	SRR8316898	Complete white stage	8.566
	SRR8316899	Complete white stage	34.504
	SRR8316903	Complete white stage	20.342
	SRR8316902	Silver flowering stage	19.382
	SRR8316904	Silver flowering stage	30.166
	SRR8316905	Silver flowering stage	16.462
	SRR8316906	Gold flowering stage	60.826
	SRR8316907	Gold flowering stage	46.302
	SRR8316908	Gold flowering stage	100.307
SRP132670	SRR6706286	Control	50.922
	SRR6706287	Light intensity 50%	50.358
	SRR6706288	Light intensity 20%	54.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.083
	CNS0095593	Slightly white alabastrum(diploid) 2	23.555
	CNS0095594	Slightly white alabastrum(diploid) 3	28.464
	CNS0095595	Whole white alabastrum(diploid) 2	26.266
	CNS0095596	Whole white alabastrum(diploid) 3	22.609
	CNS0095597	Whole white alabastrum(diploid) 4	23.568
	CNS0095598	Silvery flower (diploied) 1	58.512
	CNS0095599	Silvery flower (diploied) 2	48.475
	CNS0095600	Silvery flower (diploied) 3	45.597
	CNS0095601	Golden flower (diploid) 1	47.412
	CNS0095602	Golden flower (diploid) 2	58.234
	CNS0095603	Golden flower (diploid) 3	56.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.191
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	114.348
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.041
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.219
	CNS0095610	Silvery flower (tetraploid) 1	84.828
	CNS0095611	Silvery flower (tetraploid) 2	86.667
	CNS0095612	Silvery flower (tetraploid) 3	71.141
	CNS0095613	Golden flower (tetraploid) 1	24.442
	CNS0095614	Golden flower (tetraploid) 2	64.700
	CNS0095615	Golden flower (tetraploid) 3	114.428
CRA001975	CRR073297	Stem 1	139.194
	CRR073298	Stem 2	122.193
	CRR073299	Stem 3	149.112
	CRR073300	Leaf 1	72.417
	CRR073301	Leaf 2	59.159
	CRR073302	Leaf 3	59.706
	CRR073303	Juvenile bud 1	48.583
	CRR073304	Juvenile bud 2	51.172
	CRR073305	Juvenile bud 3	54.537
	CRR073306	Third green 1	27.502
	CRR073307	Third green 2	20.982
	CRR073308	Third green 3	28.633
	CRR073309	Second white 1	42.545
	CRR073310	Second white 2	27.468
	CRR073311	Second white 3	38.530
	CRR073312	Silver flowering 1	47.781
	CRR073313	Silver flowering 2	61.307
	CRR073314	Silver flowering 3	42.875
	CRR073315	Gold flowering 1	478.012
	CRR073316	Gold flowering 2	811.445
	CRR073317	Gold flowering 3	963.225
	CRR073318	Tawny withering 1	71.927
	CRR073319	Tawny withering 2	47.613
	CRR073320	Tawny withering 3	58.527