Gene detail

Detail information of GWHGAAZE023821

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648359.1	0	PREDICTED: serine/threonine-protein kinase EDR1 [Vitis vinifera]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	9E-67	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6H3P3\|F6H3P3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46576.1}
TAIR10	AT5G11850.1	9E-135	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27221496	27226842	+
GWHAAZE00000007	mRNA	27221496	27226842	+
GWHAAZE00000007	exon	27221496	27221975	+
GWHAAZE00000007	exon	27223617	27224057	+
GWHAAZE00000007	exon	27224454	27224546	+
GWHAAZE00000007	exon	27224929	27225032	+
GWHAAZE00000007	exon	27225759	27226842	+
GWHAAZE00000007	five_prime_UTR	27221496	27221576	+
GWHAAZE00000007	CDS	27221577	27221975	+
GWHAAZE00000007	CDS	27223617	27224057	+
GWHAAZE00000007	CDS	27224454	27224546	+
GWHAAZE00000007	CDS	27224929	27225032	+
GWHAAZE00000007	CDS	27225759	27226842	+

Transcript Sequence
>GWHTAAZE023851 GAGAAATTAATTATTGATACGAAGAAATATTCTAGAGAGCGAGAAAAAAATCAGATTATTTGTCTAAATCATCGATGCGACATGTCGAAAATGAAGCATCTACTCCGAAAGCTGCATATCGGCGGTGGAGGGGGTGGTGGCGGAGCCTTCAACGATCATCATCAATCTCAGCCGTTGATCAGTCCACCTGGACCACCGCCACCGCCGCTACCGATTATTGAGTCCTCGACTTCTTCGTCTTCATCCTCGGGTGCAACTAGGGCTACTCCTATTGATTCATCGTCGGGGGAGAATAACAATTGCGTCGATTTCAATTTTTTCGAGGAGGAATTTCAGATGCAGCTTGCTTTGGCGATCAGCGTATCGGATCCCGAGGGGAGGGAGGATCCGGAATCTGCGCAGATCAAGGCTGCTAAGCAGAGAAGCTTGGGGCGTTCTCCTACTGAAACCCTAGTTGAGTTCCTTTCGCTTCGGTATTGGAGTAATAATGTTGTAAATTATGAGGAGAAAGTAATGGATGGGTTTTATGATGTATATGGGATTTCTTCAAATTCGGTAACGCAAGGAAAAATGCCACTATTAGTGGATCTTCAAGCAGTTTCTGTTTTGGATAATGTTGATTGCGAAGTCATTTTAGTGGACCGCACAGCTGATTTGGAACTGCTACAGCTTGAGGAAAGAGTATATAATATATCATTGGAATGCCAGGCTTTTGGGGAGGGCTGGACTGTGAGTAGTTTGATACAGAAAATTGCGGGTCTCGTTGTTGATAAAATGGGTGGTCCTGTTACCGATGCAGATGAAATGTTGAAAAAGTGGACTGCAAGGAGCTATGAATTACGAAGTTCTCTGAACACTATCATCCTTCCCCTTGGTGGTCTTGATGTTGGACTGTCACGGCATAGGGCTTTGCTCTTTAAGGGAGACTCTTATCCTTTAGGATCCTCTTCAGAGCCTGGGCGTAACCTAGATATTTATGAGACTCTTTATGTTAAGGAGCAAAGCTATGATAAGGTACTTGCTGATAGGATCAACCTCCCATGTATGCTGGTCAAAGGGAGCTACTATACTGGCACTGACGAGGGAGCTGTGAACTTGATTAAAGTTGAAACCGGAAATGAGTATATTATTGATCTAATGGGTGCTCCGGGCACACTAATTCCTGCTGAGGCACCCGGTTCTAATCTTCAAAACTTTGGTTTAGATACAAGGAGTGTTGCAGAGCTTGCCGAAAATTTCAAATGTTCAGGTTCCATGTTTGAAAAGGGATCCGACCCTATAGTGGCTGGTTCTAAAGATCTTGATGGAGTTGCCAAATTTGGTAATTTGAGTCCAGAAATAGCATCTCTTGTAGGCACCCCTTCGAAAGGGACCAATGGGAAATTCGTGGAGAAAAATCAAACCGAGAGATTTGAGCATGACTTTGGAAAGCTTCTTCCATCACTATGTAGATCACAAGAAGGGTCCCCGGGCACTGTGGGGAAAGCATCAGCTGCGCAAAAGTTGCAGGTTAAAGATGTTTCCAAATACGTAATCAGTGCCGCAAAAAACCCTGAATTTGCTTCGAAACTTCATGCTGTTTTGTTAGAAAATGGTGCATCATCACCTCTAGATTTTCTTTCGGATTTGAATCCCCAATTGCTTGAGAATGTTAATTTATGGAATGGGGAAAGAGTCGATGGTGAGGTTCAATGTGAACCGTTGATCTGTTTGTCTAACAATGAGCAGTCTATTATACCCTTTACTGGATTGATGTCATCGAACAATGCTGCTGAGGTTTCAAACGAACGGCAGCAGGAAGCCGAGTTCGATATTTTGAGCCGTGGGAACTCTTTACCATCCGTTACTACAAGCGAGGGCTTTGTGCTTGTTTGTAGTGGAACTAATGAAGCCAAGCAGACCAATGATGTGGGTGGTTGTGGCATTCTTGTTGATCAGTCTAAAGGGGTTCCGAGAACATTAGATTCGGAGCTAATTCCTTTCAAAGGACAATCTTCAAATTCCTTTGCTGGTGATGGTGGGCAATGCTTTAAGGATAAAATGGGAAAGGTTTTCAATAACATTGAAAAGGACAAAGATACAGATATTGGTCAAAATGAGAGGATTAGTCCAATGATGGGTGAGGTTGCAGAATGGGAAATTCCATGGGAGGATCTTCAGATTGGAGAACGCATTGGCATCGGTAAGAATTTATTTTCCTAG

Network for GWHGAAZE023821

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	126	280	3.30E-49
PF14381.7	EDR1	311	360	3.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04424	ZAK, MLTK	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.084
	SRR3591706	second leaf	4.739
	SRR3591707	mature leaf	6.971
	SRR3591708	Shoot apex	2.805
	SRR3591709	Stem	9.331
	SRR3591710	White floral bud	11.205
	SRR3591711	White flower	17.132
	SRR3591712	Green floral bud	7.175
	SRR3591713	Yellow flower	13.960
SRP173429	SRR8316895	Juvenile bud stage	3.153
	SRR8316896	Juvenile bud stage	4.104
	SRR8316897	Juvenile bud stage	4.060
	SRR8316894	Third green stage	2.662
	SRR8316900	Third green stage	7.711
	SRR8316901	Third green stage	6.515
	SRR8316898	Complete white stage	3.592
	SRR8316899	Complete white stage	8.388
	SRR8316903	Complete white stage	6.880
	SRR8316902	Silver flowering stage	5.299
	SRR8316904	Silver flowering stage	11.235
	SRR8316905	Silver flowering stage	4.615
	SRR8316906	Gold flowering stage	15.231
	SRR8316907	Gold flowering stage	13.599
	SRR8316908	Gold flowering stage	22.279
SRP132670	SRR6706286	Control	9.003
	SRR6706287	Light intensity 50%	8.734
	SRR6706288	Light intensity 20%	9.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.394
	CNS0095593	Slightly white alabastrum(diploid) 2	2.078
	CNS0095594	Slightly white alabastrum(diploid) 3	1.987
	CNS0095595	Whole white alabastrum(diploid) 2	2.387
	CNS0095596	Whole white alabastrum(diploid) 3	2.427
	CNS0095597	Whole white alabastrum(diploid) 4	2.291
	CNS0095598	Silvery flower (diploied) 1	5.208
	CNS0095599	Silvery flower (diploied) 2	2.906
	CNS0095600	Silvery flower (diploied) 3	14.721
	CNS0095601	Golden flower (diploid) 1	2.971
	CNS0095602	Golden flower (diploid) 2	15.532
	CNS0095603	Golden flower (diploid) 3	15.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.620
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.463
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.886
	CNS0095610	Silvery flower (tetraploid) 1	29.095
	CNS0095611	Silvery flower (tetraploid) 2	25.436
	CNS0095612	Silvery flower (tetraploid) 3	22.225
	CNS0095613	Golden flower (tetraploid) 1	10.304
	CNS0095614	Golden flower (tetraploid) 2	24.356
	CNS0095615	Golden flower (tetraploid) 3	25.170
CRA001975	CRR073297	Stem 1	5.083
	CRR073298	Stem 2	5.720
	CRR073299	Stem 3	4.699
	CRR073300	Leaf 1	6.806
	CRR073301	Leaf 2	6.406
	CRR073302	Leaf 3	5.776
	CRR073303	Juvenile bud 1	6.406
	CRR073304	Juvenile bud 2	5.351
	CRR073305	Juvenile bud 3	6.449
	CRR073306	Third green 1	8.892
	CRR073307	Third green 2	5.205
	CRR073308	Third green 3	8.671
	CRR073309	Second white 1	6.619
	CRR073310	Second white 2	9.928
	CRR073311	Second white 3	12.035
	CRR073312	Silver flowering 1	7.421
	CRR073313	Silver flowering 2	5.377
	CRR073314	Silver flowering 3	5.924
	CRR073315	Gold flowering 1	1.845
	CRR073316	Gold flowering 2	3.582
	CRR073317	Gold flowering 3	1.833
	CRR073318	Tawny withering 1	3.429
	CRR073319	Tawny withering 2	2.527
	CRR073320	Tawny withering 3	3.999