Gene detail

Detail information of GWHGAAZE023831

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010262151.1	PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Nelumbo nucifera]
COG	YP_001520211.1	glycine dehydrogenase
Swissprot	tr\|P49361\|GCSPA_FLAPR	Glycine dehydrogenase (decarboxylating) A, mitochondrial (Precursor)
trEMBL	tr\|A0A061GRY8\|A0A061GRY8_THECC	Glycine decarboxylase P-protein 1 {ECO:0000313\|EMBL:EOY29899.1}
TAIR10	AT2G26080.1	glycine decarboxylase P-protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27525146	27534772	+
GWHAAZE00000007	mRNA	27525146	27534772	+
GWHAAZE00000007	exon	27525146	27526402	+
GWHAAZE00000007	exon	27526495	27526740	+
GWHAAZE00000007	exon	27527308	27527385	+
GWHAAZE00000007	exon	27527488	27527588	+
GWHAAZE00000007	exon	27527673	27527868	+
GWHAAZE00000007	exon	27528906	27529031	+
GWHAAZE00000007	exon	27529766	27529951	+
GWHAAZE00000007	exon	27530033	27530146	+
GWHAAZE00000007	exon	27531218	27531370	+
GWHAAZE00000007	exon	27532410	27532478	+
GWHAAZE00000007	exon	27532545	27532598	+
GWHAAZE00000007	exon	27533204	27533281	+
GWHAAZE00000007	exon	27533373	27533498	+
GWHAAZE00000007	exon	27533594	27533692	+
GWHAAZE00000007	exon	27533818	27533935	+
GWHAAZE00000007	exon	27534678	27534772	+
GWHAAZE00000007	CDS	27525146	27526402	+
GWHAAZE00000007	CDS	27526495	27526740	+
GWHAAZE00000007	CDS	27527308	27527385	+
GWHAAZE00000007	CDS	27527488	27527588	+
GWHAAZE00000007	CDS	27527673	27527868	+
GWHAAZE00000007	CDS	27528906	27529031	+
GWHAAZE00000007	CDS	27529766	27529951	+
GWHAAZE00000007	CDS	27530033	27530146	+
GWHAAZE00000007	CDS	27531218	27531370	+
GWHAAZE00000007	CDS	27532410	27532478	+
GWHAAZE00000007	CDS	27532545	27532598	+
GWHAAZE00000007	CDS	27533204	27533281	+
GWHAAZE00000007	CDS	27533373	27533498	+
GWHAAZE00000007	CDS	27533594	27533692	+
GWHAAZE00000007	CDS	27533818	27533935	+
GWHAAZE00000007	CDS	27534678	27534772	+

Transcript Sequence
>GWHTAAZE023861 ATGGAACGTGCTCGGCGGCTGGCCAACCGGGCAATTCTCAGGCGACTGATGTCGGAGTCTAAGCAGCTCCGGCAGGCTGAGTTGCCGCCGAGTTCTTCGTCTGCCCCGGTTTTGTATACGCCGTCGAGGTATGTTTCTTCCCTGTCTGGTTATGTGGGGAGAATTACTGGTAGATCAGGTGTTTGTAGAAATGTCTCACAGAATGTCGAAGGGTTTGGTGGGATTGGTTCTCAAGTTAGATCCATATCTGTTGATGCATTGAAACCCAGTGACACTTTCCCTCGTCGACATAACTCGGCCACACCCGAGGACAAAACAAAAATGTCTGAGTTTTGTGGGTTTGGGAGTCTTGATTCGTTAATCGATGCAACTGTACCTAAATCAATTCGGTTACAATCAATGAAGTTTTCAAAGTTTGATGATGGGTTAACTGAGAGTCAAATGATTGAGCACATGCAAAGTTTAGCTTCTAAGAATAAGGTTTTCAAGTCTTTTATTGGGATGGGGTATTATAACACCTCTGTTCCCCCTGTGATTTTGAGGAACATTATGGAGAATCCGGGTTGGTATACCCAGTATACTCCGTACCAGGCCGAGATAGCTCAAGGGCGTCTCGAGTCTTTGCTTAATTACCAGACCATGATTTCGGATCTTACTGGCCTCCCCATGTCGAACGCTTCCTTGCTTGATGAAGGAACCGCTGCGGCCGAGGCAATGGCCATGTGCAATAACATTGTGAAGGGAAAGAAGAAAACTTTCATTATTGCTAGTAACTGTCACCCGCAGACAATCGATGTTTGCAAGACTAGAGCGGATGGTTTCGAGATTAAGGTAGTTACGGCTGATCTCAAGGACTTTGATTACAAGTCGGGTGATGTTTGTGGTGTTTTGGTCCAGTATCCGGGTACCGAAGGTGAAATTTTGGACTATGGGGAGTTTATTAAGAACGCCCACGCAAATGGGGTGAAGGTTGTTATGGCGACCGATCTTTTGGCTTTGACCATGTTGAAGCCTCCGGGTGAGTTTGGGGCCGATATTGTTGTCGGTTCGGCTCAGAGGTTTGGCGTTCCAATGGGTTATGGTGGTCCTCATGCAGCGTTCCTCGCTACATCCCACGAGTACAAGAGGATAATGCCTGGGAGAATTATTGGTGTGAGCGTTGATTCTTCAGGTAAGCCTGCTCTACGCATGGCCATGCAGACACGGGAGCAACATATCCGGAGGGACAAGGCTACAAGCAACATCTGCACTGCTCAGGCACTTCTTGCAAACATGGCTGCTATGTACGCCGTTTATCATGGACCCGAAGGCCTCAAAACTATTGCCCAACGCGTCCACGGTCTTGCAGGCACATTTGCTGCAGGACTCAAGAAACTTGGAACAGTAGAAGTCCAGGGGCTTCCCTTCTTTGACACGGTGAAGATTACATGTGCTGATTCCCAGAAAATTGCAGATGCTGCTTACAAGAGTGAGATGAATCTCCGAATTCTGGACAAGAACACTATCACTGTTTCTTTTGATGAAACCACGACCCTAGAGGATGTAGATGAGCTATTCAAGGTGTTTGCTTCTGGGAAGCCTGTCCCATTCACTGCTGCATCTATTGCACCAGAGGTTAAGGATATTCTTCCCCCAGGGCTTGTGAGAGAGAGCCCATATCTGACTCACCCAATTTTCAACTCGTACCATAACGAGCATGAGCTTCTCAGATACATTCATAAGTTGCAATCAAAGGATCTTTCCTTGGTCCACAGTATGATCCCGTTGGGATCTTGTACAATGAAGTTGAACGCAACGACAGAGATGATGCCTGTTACATGGCCAAGTTTTGCAAACATGCACCCTTTTGCCCCTACTGAACAGGCTGAGGGCTATCAGGAAATGTTCACTAATTTGGGGGACCTGTTGTGTACCATCACTGGCTTCGATTCGTTCTCTTTGCAACCCAATGCTGGTGCTGCTGGTGAGTATGCTGGGCTGATGGTTATCCGTGCATATCATAAGGCAAGAGGAGACCATCATCGCAATGCTTGCATTATACCTGTTTCTGCACATGGAACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTATTACTGTTGGAACTGATGCCAAGGGAAACATCAATATTGAGGAGTTAAGAAAAGCCGCTGAAGCAAACAAGGATAACCTGTCTGCCCTTATGGTTACATATCCATCTACACATGGAGTTTATGAGGAAGGTATTGATGAGATCTGTAAGATAATTCATGACAATGGTGGTCAAGTTTACATGGACGGAGCCAACATGAATGCTCAGGTTGGTCTGACGAGTCCAGGCTGGATCGGTGCTGATGTTTGCCATCTCAATCTCCACAAAACTTTCTGCATTCCCCATGGTGGAGGCGGTCCTGGCATGGGTCCTATTGGTGTCAAGAAACACTTGGCACCGTATTTGCCATCTCACCCTGTGATCTCTACAGGAGGTATACCGGCCCGGAGAAAGCTCAGCCACTTGGGACTATTTCAGCAGCACCTTGGGGCAGCGTCAAAGATAGCCATCTTGAATGCAAACTACATGGCTAAACGTTTGGAGAACCACTACCCTATTCTTTTCCGTGGTGTCAATGGAACGGTTGCCCATGAATTTATTGTTGATCTGAGGGGCTTCAAGCATACGGCTGGAATAGAGCCAGAAGACGTGGCTAAACGTCTTATGGACTACGGATTTCATGGACCAACAATGTCATGGCCCGTCCCGGGTACCCTCATGATTGAACCCACCGAAAGTGAAAGCAAGGCGGAGTTAGACAGGTTTTGTGATGCACTTATCTCCATTAGGGAAGAAATTGCACTGATTGAGAAAGGAAAAGCTGATATTCACAACAATATTCTCAAGGGAGCACCGCATCCACCCTCGCTACTCATGGCAGACAAATGGAGCAAACCTTACTCTCGGGAAGATGCAGCCTACCCCGCTTCTTGGCTCCGCTCTGCCAAGTTCTGGCCAACCACTGGGCGTGTGGATAATGTGTATGGTGATCGCAACCTTGTCTGCACCCTTCAGCCAGCAACACAGGTTGTGGAAGAACAAGCAGCAGCTACTGCTTAA

Network for GWHGAAZE023831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02347.17	GDC-P	96	522	2.90E-184
PF02347.17	GDC-P	557	815	1.70E-11

Protein Sequence

>GWHPAAZE023847
MERARRLANRAILRRLMSESKQLRQAELPPSSSSAPVLYTPSRYVSSLSGYVGRITGRSGVCRNVSQNVEGFGGIGSQVRSISVDALKPSDTFPRRHNSATPEDKTKMSEFCGFGSLDSLIDATVPKSIRLQSMKFSKFDDGLTESQMIEHMQSLASKNKVFKSFIGMGYYNTSVPPVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNYQTMISDLTGLPMSNASLLDEGTAAAEAMAMCNNIVKGKKKTFIIASNCHPQTIDVCKTRADGFEIKVVTADLKDFDYKSGDVCGVLVQYPGTEGEILDYGEFIKNAHANGVKVVMATDLLALTMLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSHEYKRIMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFAAGLKKLGTVEVQGLPFFDTVKITCADSQKIADAAYKSEMNLRILDKNTITVSFDETTTLEDVDELFKVFASGKPVPFTAASIAPEVKDILPPGLVRESPYLTHPIFNSYHNEHELLRYIHKLQSKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPSFANMHPFAPTEQAEGYQEMFTNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNACIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINIEELRKAAEANKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVISTGGIPARRKLSHLGLFQQHLGAASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRGFKHTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIALIEKGKADIHNNILKGAPHPPSLLMADKWSKPYSREDAAYPASWLRSAKFWPTTGRVDNVYGDRNLVCTLQPATQVVEEQAAATA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00281	GLDC, gcvP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0006544	biological_process	glycine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006546	biological_process	glycine catabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004375	molecular_function	glycine dehydrogenase (decarboxylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	183.882
	SRR3591706	second leaf	693.316
	SRR3591707	mature leaf	1254.213
	SRR3591708	Shoot apex	265.643
	SRR3591709	Stem	450.212
	SRR3591710	White floral bud	72.629
	SRR3591711	White flower	77.716
	SRR3591712	Green floral bud	86.619
	SRR3591713	Yellow flower	54.762
SRP173429	SRR8316895	Juvenile bud stage	123.619
	SRR8316896	Juvenile bud stage	134.639
	SRR8316897	Juvenile bud stage	62.527
	SRR8316894	Third green stage	44.203
	SRR8316900	Third green stage	92.607
	SRR8316901	Third green stage	95.166
	SRR8316898	Complete white stage	17.280
	SRR8316899	Complete white stage	53.154
	SRR8316903	Complete white stage	30.674
	SRR8316902	Silver flowering stage	29.469
	SRR8316904	Silver flowering stage	38.469
	SRR8316905	Silver flowering stage	21.121
	SRR8316906	Gold flowering stage	91.016
	SRR8316907	Gold flowering stage	79.824
	SRR8316908	Gold flowering stage	130.950
SRP132670	SRR6706286	Control	79.734
	SRR6706287	Light intensity 50%	83.252
	SRR6706288	Light intensity 20%	84.006
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.125
	CNS0095593	Slightly white alabastrum(diploid) 2	51.781
	CNS0095594	Slightly white alabastrum(diploid) 3	55.453
	CNS0095595	Whole white alabastrum(diploid) 2	55.175
	CNS0095596	Whole white alabastrum(diploid) 3	53.160
	CNS0095597	Whole white alabastrum(diploid) 4	51.387
	CNS0095598	Silvery flower (diploied) 1	101.934
	CNS0095599	Silvery flower (diploied) 2	81.017
	CNS0095600	Silvery flower (diploied) 3	71.933
	CNS0095601	Golden flower (diploid) 1	91.360
	CNS0095602	Golden flower (diploid) 2	91.879
	CNS0095603	Golden flower (diploid) 3	88.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	95.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.986
	CNS0095606	Slightly white alabastrum(tetraploid) 3	166.438
	CNS0095607	Whole white alabastrum(tetraploid) 1	81.575
	CNS0095608	Whole white alabastrum(tetraploid) 2	65.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	126.334
	CNS0095610	Silvery flower (tetraploid) 1	125.869
	CNS0095611	Silvery flower (tetraploid) 2	152.036
	CNS0095612	Silvery flower (tetraploid) 3	130.588
	CNS0095613	Golden flower (tetraploid) 1	50.803
	CNS0095614	Golden flower (tetraploid) 2	115.506
	CNS0095615	Golden flower (tetraploid) 3	208.007
CRA001975	CRR073297	Stem 1	229.046
	CRR073298	Stem 2	174.607
	CRR073299	Stem 3	239.620
	CRR073300	Leaf 1	106.449
	CRR073301	Leaf 2	102.195
	CRR073302	Leaf 3	96.797
	CRR073303	Juvenile bud 1	78.765
	CRR073304	Juvenile bud 2	68.932
	CRR073305	Juvenile bud 3	87.746
	CRR073306	Third green 1	42.446
	CRR073307	Third green 2	37.024
	CRR073308	Third green 3	41.457
	CRR073309	Second white 1	65.352
	CRR073310	Second white 2	41.722
	CRR073311	Second white 3	55.715
	CRR073312	Silver flowering 1	70.249
	CRR073313	Silver flowering 2	92.938
	CRR073314	Silver flowering 3	71.880
	CRR073315	Gold flowering 1	886.945
	CRR073316	Gold flowering 2	1297.835
	CRR073317	Gold flowering 3	1488.563
	CRR073318	Tawny withering 1	137.896
	CRR073319	Tawny withering 2	107.589
	CRR073320	Tawny withering 3	116.745