Gene detail

Detail information of GWHGAAZE023837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278796.3	1.3197E-140	PREDICTED: homeobox protein ATH1 [Vitis vinifera]
Swissprot	tr\|P48731\|ATH1_ARATH	2E-91	Homeobox protein ATH1
trEMBL	tr\|F6H395\|F6H395_VITVI	6E-141	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46551.1}
TAIR10	AT4G32980.1	2E-72	homeobox gene 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27747423	27751446	-
GWHAAZE00000007	mRNA	27747423	27751446	-
GWHAAZE00000007	exon	27747423	27747590	-
GWHAAZE00000007	exon	27748190	27748250	-
GWHAAZE00000007	exon	27748942	27749300	-
GWHAAZE00000007	exon	27750526	27750737	-
GWHAAZE00000007	exon	27750951	27751446	-
GWHAAZE00000007	CDS	27750951	27751446	-
GWHAAZE00000007	CDS	27750526	27750737	-
GWHAAZE00000007	CDS	27748942	27749300	-
GWHAAZE00000007	CDS	27748190	27748250	-
GWHAAZE00000007	CDS	27747423	27747590	-

Transcript Sequence
>GWHTAAZE023867 ATGGCTTCACTTTCTCATTCAAATTCCCTCGATCCAAACAGCCAAAACCCGTTCATGTCTGGATTACCCGTTCTTTCGATGCTCCAGGGTGAACCCATAAATGATCTCCACACGGGTCTTCACATACCGAACCGAACCCGTATCACTAACCCCAATGAGTTTCATGATCAATTTATGGCTGGAATGCCCATTTCTGCTTCATCACTAGCAACCCTTTTGGCTACAAGGTATAGTAATCCTCATGAGAATCTAAATGACATCGTAAATCCCGCACCGTTTACGCATCCCGAGGAAGTTCTAAAGCCAAATGACTACTCAGATACATTTAGATCTTCATTTGGTACAGCCCCAAATTTTGGGGGTGATGGAATAACGGGCGATATGAGCAGTAAATGGGGATTCGACAAGTTTCTTGCTCCTCTTGAACTTGCAAGGACAGGATTTCAACCGTTCCAGCTAATGGGAACCATGGATCCAAACGGGTCCGATAGTCCTGAGTTGTTATCTGGGTCGGGTTATATTCAAGTGATGCAAGAAATTCTTGCTGAAATTGCTAGCTATTCGCTTGAAAATCATCATCCGATGAGCTATCAAGGTGGTGGGATTGGGGGAGGGCCACATTTGTCGTTTTCTTCGAGTTGCTCTGCTGGAAGAAGCTACAAGCTAATGGATTGTGATGAGGTTGGTGACGGTGATGATCAATCTGGGGTTGATGATCGATACAACCAATGTATGGATGAGATCCACACCGTAATATCTGCTTTCCACGCTGTAACAGAATTGGATCCTAACGTACACGCCCGTTTTGCACTTCAAACAATATCGTTCATGTATAAAAACTTGAGAGAGAGAATTAGCAACCATATACTTTCAATGGGGACACATTTCGGCAGAGGAGGAGGTGTAAGAGAAGAGGAGAAGTCTTTTGAGTCGTCTTTTATACAGAAGCAATGGGCTCTGCAGCAGCTAAAGAGAAAAGACCATCAGTTGTGGAGGCCCCAGAGAGGCTTGCCTGAAAAATCTGTCTCAGTTTTACGTGCATGGATGTTTCAAAACTTCCTTCACCCGTATCCCAAGGACGCGGAGAAGCATTTGCTAGCCGTAAAAAGTGGATTGACAAGGAGCCAGGTGTCTAATTGGTTTATAAATGCCCGAGTTCGGCTGTGGAAACCAATGATAGAGGAAATGTACTTGGAGATGAACAGAAGGAAAAATCGCCGCAATGATGAAGATAAAGATCGGGCCAATCTTCGGAACCATATTAGCATCGATTATCAGAGATTTAAAATGATTTGA

Network for GWHGAAZE023837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.12	POX	168	286	1.20E-16
PF05920.12	Homeobox_KN	348	387	2.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.663
	SRR3591706	second leaf	8.355
	SRR3591707	mature leaf	6.374
	SRR3591708	Shoot apex	29.251
	SRR3591709	Stem	6.544
	SRR3591710	White floral bud	7.841
	SRR3591711	White flower	5.863
	SRR3591712	Green floral bud	4.834
	SRR3591713	Yellow flower	1.252
SRP173429	SRR8316895	Juvenile bud stage	7.786
	SRR8316896	Juvenile bud stage	6.685
	SRR8316897	Juvenile bud stage	3.823
	SRR8316894	Third green stage	2.077
	SRR8316900	Third green stage	3.091
	SRR8316901	Third green stage	2.449
	SRR8316898	Complete white stage	0.474
	SRR8316899	Complete white stage	5.011
	SRR8316903	Complete white stage	1.329
	SRR8316902	Silver flowering stage	0.324
	SRR8316904	Silver flowering stage	0.739
	SRR8316905	Silver flowering stage	0.117
	SRR8316906	Gold flowering stage	0.373
	SRR8316907	Gold flowering stage	1.296
	SRR8316908	Gold flowering stage	0.552
SRP132670	SRR6706286	Control	3.378
	SRR6706287	Light intensity 50%	4.105
	SRR6706288	Light intensity 20%	3.581
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.335
	CNS0095593	Slightly white alabastrum(diploid) 2	4.341
	CNS0095594	Slightly white alabastrum(diploid) 3	4.315
	CNS0095595	Whole white alabastrum(diploid) 2	4.718
	CNS0095596	Whole white alabastrum(diploid) 3	1.681
	CNS0095597	Whole white alabastrum(diploid) 4	3.794
	CNS0095598	Silvery flower (diploied) 1	12.391
	CNS0095599	Silvery flower (diploied) 2	8.867
	CNS0095600	Silvery flower (diploied) 3	3.476
	CNS0095601	Golden flower (diploid) 1	10.267
	CNS0095602	Golden flower (diploid) 2	4.586
	CNS0095603	Golden flower (diploid) 3	5.308
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.845
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.324
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.530
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.543
	CNS0095610	Silvery flower (tetraploid) 1	1.889
	CNS0095611	Silvery flower (tetraploid) 2	4.164
	CNS0095612	Silvery flower (tetraploid) 3	2.541
	CNS0095613	Golden flower (tetraploid) 1	0.941
	CNS0095614	Golden flower (tetraploid) 2	1.238
	CNS0095615	Golden flower (tetraploid) 3	0.623
CRA001975	CRR073297	Stem 1	5.451
	CRR073298	Stem 2	4.239
	CRR073299	Stem 3	4.120
	CRR073300	Leaf 1	2.184
	CRR073301	Leaf 2	4.031
	CRR073302	Leaf 3	2.223
	CRR073303	Juvenile bud 1	1.085
	CRR073304	Juvenile bud 2	1.774
	CRR073305	Juvenile bud 3	2.051
	CRR073306	Third green 1	0.707
	CRR073307	Third green 2	0.434
	CRR073308	Third green 3	0.892
	CRR073309	Second white 1	0.140
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.098
	CRR073312	Silver flowering 1	0.169
	CRR073313	Silver flowering 2	0.123
	CRR073314	Silver flowering 3	0.093
	CRR073315	Gold flowering 1	3.540
	CRR073316	Gold flowering 2	3.683
	CRR073317	Gold flowering 3	2.143
	CRR073318	Tawny withering 1	3.381
	CRR073319	Tawny withering 2	2.047
	CRR073320	Tawny withering 3	1.948