Gene detail

Detail information of GWHGAAZE023854

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004304009.1	8.07287E-23	PREDICTED: F-box protein At5g07610-like isoform 2 [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9FLS0\|FB253_ARATH	5E-16	F-box protein At5g07610
trEMBL	tr\|A0A061F155\|A0A061F155_THECC	4E-20	F-box family protein, putative {ECO:0000313\|EMBL:EOY10417.1}
TAIR10	AT5G07610.1	2E-14	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28220767	28221531	+
GWHAAZE00000007	mRNA	28220767	28221531	+
GWHAAZE00000007	exon	28220767	28220782	+
GWHAAZE00000007	exon	28220888	28221531	+
GWHAAZE00000007	CDS	28220767	28220782	+
GWHAAZE00000007	CDS	28220888	28221531	+

Transcript Sequence
>GWHTAAZE023884 ATGCTCCAGCGTTTGAGATCCAAGAACAACAACATCATCGGCAAAATTGCGACTGAAAAACAACCGTTGTACTTTTCTCCGAGAGATCTAATCGGAAGCAACGAACATCTCTTACGTAAGATTCTTATTCATGTTCCTGATAAGCCTCTCTGTAGATTCAAATTAGTCTCCAAATTATGGCTCTCTATAATCTCCGATCCCGATTTCTCTCGCAACTGGCACACAAAACACGTCCCCTCTCCGTCCGCCCTCTTGTTTTGTACAACATATCGTTGCAGGTACAAATTCATTTCACTCGACGAACGAGAGAAAAATTCATTTTCCCCTGATTTTTATTTTAATTTTAATTTTCTCCCTTTCTCCGATCACGCTCATTCTAGTACTAAAATCCTACAATCTTGCAATGGTTTGCTACTTCTTATGGTTAAGGATGGTTTTGGTGTACACAATCCATCGACCAATCAATCAAAACTCACTCCAAAACTTCCTGAAAAGTACTCTAAGCTCTCTGGTCTTTGCACTAGATTGGTTTTTGATCCATCGAAATCGCCTCATTATAAAGTCTTTTCATTCTTCAGCTTACGCGATTATTATAAGCTTTTATCTATTGAAATATTGATATATGCGTCGGAAACGGACTTTGGAAAGTACTATCTATAG

Network for GWHGAAZE023854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	36	70	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.551
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	2.073
	SRR3591713	Yellow flower	0.263
SRP173429	SRR8316895	Juvenile bud stage	3.270
	SRR8316896	Juvenile bud stage	8.288
	SRR8316897	Juvenile bud stage	1.751
	SRR8316894	Third green stage	1.685
	SRR8316900	Third green stage	3.062
	SRR8316901	Third green stage	2.439
	SRR8316898	Complete white stage	0.573
	SRR8316899	Complete white stage	0.743
	SRR8316903	Complete white stage	0.903
	SRR8316902	Silver flowering stage	1.366
	SRR8316904	Silver flowering stage	1.328
	SRR8316905	Silver flowering stage	0.310
	SRR8316906	Gold flowering stage	4.462
	SRR8316907	Gold flowering stage	0.949
	SRR8316908	Gold flowering stage	2.305
SRP132670	SRR6706286	Control	2.785
	SRR6706287	Light intensity 50%	2.371
	SRR6706288	Light intensity 20%	2.523
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.359
	CNS0095593	Slightly white alabastrum(diploid) 2	0.915
	CNS0095594	Slightly white alabastrum(diploid) 3	2.854
	CNS0095595	Whole white alabastrum(diploid) 2	1.441
	CNS0095596	Whole white alabastrum(diploid) 3	2.544
	CNS0095597	Whole white alabastrum(diploid) 4	1.860
	CNS0095598	Silvery flower (diploied) 1	0.373
	CNS0095599	Silvery flower (diploied) 2	0.251
	CNS0095600	Silvery flower (diploied) 3	0.891
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.742
	CNS0095603	Golden flower (diploid) 3	0.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.220
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.195
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.988
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.884
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.151
	CNS0095610	Silvery flower (tetraploid) 1	5.553
	CNS0095611	Silvery flower (tetraploid) 2	4.136
	CNS0095612	Silvery flower (tetraploid) 3	2.512
	CNS0095613	Golden flower (tetraploid) 1	2.315
	CNS0095614	Golden flower (tetraploid) 2	4.520
	CNS0095615	Golden flower (tetraploid) 3	6.167
CRA001975	CRR073297	Stem 1	2.085
	CRR073298	Stem 2	1.414
	CRR073299	Stem 3	0.571
	CRR073300	Leaf 1	1.252
	CRR073301	Leaf 2	1.490
	CRR073302	Leaf 3	0.031
	CRR073303	Juvenile bud 1	0.470
	CRR073304	Juvenile bud 2	0.400
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.059
	CRR073309	Second white 1	0.097
	CRR073310	Second white 2	1.496
	CRR073311	Second white 3	0.773
	CRR073312	Silver flowering 1	0.946
	CRR073313	Silver flowering 2	0.162
	CRR073314	Silver flowering 3	0.235
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.543
	CRR073319	Tawny withering 2	0.955
	CRR073320	Tawny withering 3	0.000