Detail information of GWHGAAZE023856


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08230.19.03935E-98unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UI89|A0A068UI89_COFCA3E-98Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313|EMBL:CDP08230.1}
TAIR10AT1G55340.11E-27Protein of unknown function (DUF1639)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2823140428238305-
GWHAAZE00000007mRNA2823140428238305-
GWHAAZE00000007exon2823820228238305-
GWHAAZE00000007exon2823796028238042-
GWHAAZE00000007exon2823771128237852-
GWHAAZE00000007exon2823736328237615-
GWHAAZE00000007exon2823617928236589-
GWHAAZE00000007exon2823325928233694-
GWHAAZE00000007exon2823155428231631-
GWHAAZE00000007exon2823140428231457-
GWHAAZE00000007five_prime_UTR2823820228238305-
GWHAAZE00000007five_prime_UTR2823796028238042-
GWHAAZE00000007five_prime_UTR2823771128237852-
GWHAAZE00000007five_prime_UTR2823740128237615-
GWHAAZE00000007CDS2823736328237400-
GWHAAZE00000007CDS2823617928236589-
GWHAAZE00000007CDS2823325928233694-
GWHAAZE00000007CDS2823155428231631-
GWHAAZE00000007CDS2823140428231457-
Transcript Sequence

Network for GWHGAAZE023856

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0276


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07797.15DUF16392462827.80E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.482
SRR3591706second leaf39.909
SRR3591707mature leaf52.411
SRR3591708Shoot apex39.463
SRR3591709Stem70.180
SRR3591710White floral bud52.662
SRR3591711White flower48.350
SRR3591712Green floral bud43.557
SRR3591713Yellow flower33.601
SRP173429 SRR8316895Juvenile bud stage 23.515
SRR8316896Juvenile bud stage 33.502
SRR8316897Juvenile bud stage 12.132
SRR8316894Third green stage 14.605
SRR8316900Third green stage 46.819
SRR8316901Third green stage 46.242
SRR8316898Complete white stage 23.947
SRR8316899Complete white stage 71.490
SRR8316903Complete white stage 32.025
SRR8316902Silver flowering stage14.264
SRR8316904Silver flowering stage19.510
SRR8316905Silver flowering stage9.019
SRR8316906Gold flowering stage 32.630
SRR8316907Gold flowering stage 33.565
SRR8316908Gold flowering stage 34.474
SRP132670SRR6706286Control48.847
SRR6706287Light intensity 50%48.597
SRR6706288Light intensity 20%50.573
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.822
CNS0095593Slightly white alabastrum(diploid) 231.675
CNS0095594Slightly white alabastrum(diploid) 331.311
CNS0095595Whole white alabastrum(diploid) 227.356
CNS0095596Whole white alabastrum(diploid) 325.157
CNS0095597Whole white alabastrum(diploid) 428.136
CNS0095598Silvery flower (diploied) 138.806
CNS0095599Silvery flower (diploied) 229.429
CNS0095600Silvery flower (diploied) 333.684
CNS0095601Golden flower (diploid) 130.918
CNS0095602Golden flower (diploid) 228.229
CNS0095603Golden flower (diploid) 327.189
CNS0095604Slightly white alabastrum(tetraploid) 133.100
CNS0095605Slightly white alabastrum(tetraploid) 229.650
CNS0095606Slightly white alabastrum(tetraploid) 348.159
CNS0095607Whole white alabastrum(tetraploid) 131.927
CNS0095608Whole white alabastrum(tetraploid) 226.624
CNS0095609Whole white alabastrum(tetraploid) 343.429
CNS0095610Silvery flower (tetraploid) 139.851
CNS0095611Silvery flower (tetraploid) 232.576
CNS0095612Silvery flower (tetraploid) 332.811
CNS0095613Golden flower (tetraploid) 126.299
CNS0095614Golden flower (tetraploid) 236.001
CNS0095615Golden flower (tetraploid) 316.713
CRA001975CRR073297Stem 127.752
CRR073298Stem 228.771
CRR073299Stem 326.659
CRR073300Leaf 132.051
CRR073301Leaf 233.259
CRR073302Leaf 321.633
CRR073303Juvenile bud 127.825
CRR073304Juvenile bud 222.119
CRR073305Juvenile bud 331.216
CRR073306Third green 113.107
CRR073307Third green 28.523
CRR073308Third green 311.793
CRR073309Second white 14.100
CRR073310Second white 27.579
CRR073311Second white 37.673
CRR073312Silver flowering 16.624
CRR073313Silver flowering 26.113
CRR073314Silver flowering 35.877
CRR073315Gold flowering 113.998
CRR073316Gold flowering 221.932
CRR073317Gold flowering 39.373
CRR073318Tawny withering 126.641
CRR073319Tawny withering 221.698
CRR073320Tawny withering 320.647