Gene detail

Detail information of GWHGAAZE023866

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002325965.1	0	hypothetical protein POPTR_0019s10740g [Populus trichocarpa]
Swissprot	tr\|Q9ZRV4\|MLH1_ARATH	0	DNA mismatch repair protein MLH1
trEMBL	tr\|B9IQE4\|B9IQE4_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF00347.1}
TAIR10	AT4G09140.1	2E-163	MUTL-homologue 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28450474	28482737	-
GWHAAZE00000007	mRNA	28450474	28482737	-
GWHAAZE00000007	exon	28482662	28482737	-
GWHAAZE00000007	exon	28480730	28480878	-
GWHAAZE00000007	exon	28480250	28480360	-
GWHAAZE00000007	exon	28476488	28476586	-
GWHAAZE00000007	exon	28474497	28474566	-
GWHAAZE00000007	exon	28474324	28474390	-
GWHAAZE00000007	exon	28473675	28473754	-
GWHAAZE00000007	exon	28472243	28472351	-
GWHAAZE00000007	exon	28465623	28465788	-
GWHAAZE00000007	exon	28464099	28464260	-
GWHAAZE00000007	exon	28458454	28458625	-
GWHAAZE00000007	exon	28452061	28452224	-
GWHAAZE00000007	exon	28450474	28450518	-
GWHAAZE00000007	CDS	28482662	28482737	-
GWHAAZE00000007	CDS	28480730	28480878	-
GWHAAZE00000007	CDS	28480250	28480360	-
GWHAAZE00000007	CDS	28476488	28476586	-
GWHAAZE00000007	CDS	28474497	28474566	-
GWHAAZE00000007	CDS	28474324	28474390	-
GWHAAZE00000007	CDS	28473675	28473754	-
GWHAAZE00000007	CDS	28472243	28472351	-
GWHAAZE00000007	CDS	28465623	28465788	-
GWHAAZE00000007	CDS	28464099	28464260	-
GWHAAZE00000007	CDS	28458454	28458625	-
GWHAAZE00000007	CDS	28452061	28452224	-
GWHAAZE00000007	CDS	28450474	28450518	-

Transcript Sequence
>GWHTAAZE023896 ATGGAGCTGCCAGAGCGGATGTTCACACTGTTGCTGTCTCATCGAGGCTTGATGCAATCAGATCTGTCTATGGGTTATAGATTAGTTGAATGTGCTGCTCTGAAGAGGGCTATTGAAATTGTTTATGCTGCGACCTTGCCTAAAGCATCAAAACCCTTCATATATCTGTCAATTATATTGCCACCTGAGCATGTTGATGTGAACGTACACCCAACAAAGAGAGAGGTCTATGAATATCTGTATCAGTGTGACAAGGAAGGAAGCATGGCTTTCACTATTCATGATATGACTTTTGTCTCAACGTCTAAGTACTACAATGCATTTCTCCTATACGAAGTAAGCCTTTTGAATCAGGAGGTTATTATTGAGAAGATACAGTCTGCTGTAGAATCAAAATTAAGAAACTCAAATGTGGCAAGGACGTTTGAAGAACAGACAGTAGATTCCACTCCACCTAGCCCAATATCTGTGAGCAAAGCATCCCCAATTAATCCCTCACCTCCTGGATCAAAATTGCAAAAAGTTCCGGTGAACAAAATGGTACGAACCGATGCACTGGAGCCTGTTGGAAGGTCGTCTATCAGACAAAGGAGGAACCCTAAGGAAACTGCAGATCTTACTAGCATTCAGGAGCTTATTAATGATATTGATTGTCTGTTGGATATTGTAAGGAACTGCATTTATATTGGAATGGCAGATGATGTTTGCGCTCTGCTGCAGCATAATACACACCTATATCTTGCTAATGTAGTGAATTTGAGCAAAGAACTCATGTATCAGCAAGTTCTGCAACGCTTTGCTCATTTTAATGCAATACAACTAAGTGATCCAGCTCCCCTGCCTGAATTAATTATGCTGGCGCTAAGAGAGGAGGATTTAGATGCACAAGGCAGTGAAAATGACGACCTGAAAGCAAGGATTGCCGAAATGAATACAGAACTACTGAAGCAAAAGGCAGAGATGCTAGAGGAGTATTTCTGCATCAATATTCATCCAAATGGTAATTTGTCCAGGCTTCCTGTCATACTTGATCAGTACACACCTGACATGGACCGCCTGCCTGAGTTTGCACTATGTTTGGGAAATGATGTTGATTGGGATAATGAGAAAAGCTGCTTTCAATCAATTGCTGCTTCTCTTGGAAACTTCTATGCTATGCATCCTCCTTTGTTACCTAATCCTTCGGATGATTTGCAATTTTATAAGAGGAGAATACCCTCTATCAATCCTGAAGGTGATGAAAATTCTTCAAAAGCTAGAGAGAAGGGCATAATTGAGGAGGACGAAGTTGAGCAAGAACTGCTTTCAGAAGCCGAGAATGCTTGGGCCCAGCGTGAATGGTCAATACAGCACGTTTTGTTCCCCTCCATGAGACTCTTTTTCAAGCCCCAAACATCAATGGCTACAGATGGAACCTTTGTCCAGGTGGCTTCTCTGGAGAAACTTTACAAGATTTTTGAAAGATGCTAA

Network for GWHGAAZE023866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01119.20	DNA_mis_repair	26	77	1.70E-15
PF16413.6	Mlh1_C	206	489	4.30E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08734	MLH1	Mismatch repair	map03430
K08734	MLH1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006298	biological_process	mismatch repair
GO:0005524	molecular_function	ATP binding
GO:0030983	molecular_function	mismatched DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.498
	SRR3591706	second leaf	9.980
	SRR3591707	mature leaf	9.770
	SRR3591708	Shoot apex	18.869
	SRR3591709	Stem	14.225
	SRR3591710	White floral bud	6.473
	SRR3591711	White flower	7.367
	SRR3591712	Green floral bud	9.576
	SRR3591713	Yellow flower	4.172
SRP173429	SRR8316895	Juvenile bud stage	5.105
	SRR8316896	Juvenile bud stage	6.225
	SRR8316897	Juvenile bud stage	3.621
	SRR8316894	Third green stage	2.404
	SRR8316900	Third green stage	6.035
	SRR8316901	Third green stage	5.788
	SRR8316898	Complete white stage	1.521
	SRR8316899	Complete white stage	7.305
	SRR8316903	Complete white stage	3.390
	SRR8316902	Silver flowering stage	1.097
	SRR8316904	Silver flowering stage	1.419
	SRR8316905	Silver flowering stage	0.764
	SRR8316906	Gold flowering stage	2.104
	SRR8316907	Gold flowering stage	3.285
	SRR8316908	Gold flowering stage	0.734
SRP132670	SRR6706286	Control	2.524
	SRR6706287	Light intensity 50%	3.588
	SRR6706288	Light intensity 20%	3.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.305
	CNS0095593	Slightly white alabastrum(diploid) 2	7.563
	CNS0095594	Slightly white alabastrum(diploid) 3	6.074
	CNS0095595	Whole white alabastrum(diploid) 2	5.090
	CNS0095596	Whole white alabastrum(diploid) 3	4.260
	CNS0095597	Whole white alabastrum(diploid) 4	5.277
	CNS0095598	Silvery flower (diploied) 1	5.276
	CNS0095599	Silvery flower (diploied) 2	5.468
	CNS0095600	Silvery flower (diploied) 3	3.141
	CNS0095601	Golden flower (diploid) 1	4.432
	CNS0095602	Golden flower (diploid) 2	4.787
	CNS0095603	Golden flower (diploid) 3	4.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.307
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.640
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.623
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.302
	CNS0095610	Silvery flower (tetraploid) 1	2.736
	CNS0095611	Silvery flower (tetraploid) 2	3.838
	CNS0095612	Silvery flower (tetraploid) 3	1.922
	CNS0095613	Golden flower (tetraploid) 1	1.245
	CNS0095614	Golden flower (tetraploid) 2	2.073
	CNS0095615	Golden flower (tetraploid) 3	1.320
CRA001975	CRR073297	Stem 1	4.570
	CRR073298	Stem 2	3.842
	CRR073299	Stem 3	2.743
	CRR073300	Leaf 1	3.599
	CRR073301	Leaf 2	3.266
	CRR073302	Leaf 3	2.998
	CRR073303	Juvenile bud 1	2.311
	CRR073304	Juvenile bud 2	1.087
	CRR073305	Juvenile bud 3	2.125
	CRR073306	Third green 1	0.239
	CRR073307	Third green 2	0.086
	CRR073308	Third green 3	0.537
	CRR073309	Second white 1	0.302
	CRR073310	Second white 2	0.298
	CRR073311	Second white 3	0.537
	CRR073312	Silver flowering 1	0.150
	CRR073313	Silver flowering 2	0.151
	CRR073314	Silver flowering 3	0.248
	CRR073315	Gold flowering 1	1.572
	CRR073316	Gold flowering 2	1.388
	CRR073317	Gold flowering 3	0.797
	CRR073318	Tawny withering 1	3.289
	CRR073319	Tawny withering 2	6.965
	CRR073320	Tawny withering 3	3.559