Detail information of GWHGAAZE023868


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI38068.39.2404E-135unnamed protein product [Vitis vinifera]
COGYP_003074887.17E-46DNA mismatch repair protein
Swissprottr|Q9ZRV4|MLH1_ARATH7E-126DNA mismatch repair protein MLH1
trEMBLtr|F6I1E1|F6I1E1_VITVI6E-135Putative uncharacterized protein {ECO:0000313|EMBL:CCB60758.1}
TAIR10AT4G09140.12E-100MUTL-homologue 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2848941328492947-
GWHAAZE00000007mRNA2848941328492947-
GWHAAZE00000007exon2848941328489424-
GWHAAZE00000007exon2848948728489621-
GWHAAZE00000007exon2848995228490024-
GWHAAZE00000007exon2849025428490426-
GWHAAZE00000007exon2849266328492947-
GWHAAZE00000007CDS2849266328492947-
GWHAAZE00000007CDS2849025428490426-
GWHAAZE00000007CDS2848995228490024-
GWHAAZE00000007CDS2848948728489621-
GWHAAZE00000007CDS2848941328489424-
Transcript Sequence

Network for GWHGAAZE023868

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13589.7HATPase_c_3551571.10E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08734MLH1 Mismatch repair map03430
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.290
SRR3591706second leaf8.637
SRR3591707mature leaf10.253
SRR3591708Shoot apex13.452
SRR3591709Stem11.997
SRR3591710White floral bud7.070
SRR3591711White flower5.533
SRR3591712Green floral bud7.903
SRR3591713Yellow flower3.602
SRP173429 SRR8316895Juvenile bud stage 3.482
SRR8316896Juvenile bud stage 5.334
SRR8316897Juvenile bud stage 3.032
SRR8316894Third green stage 2.477
SRR8316900Third green stage 3.151
SRR8316901Third green stage 2.516
SRR8316898Complete white stage 0.239
SRR8316899Complete white stage 5.184
SRR8316903Complete white stage 1.135
SRR8316902Silver flowering stage0.271
SRR8316904Silver flowering stage1.036
SRR8316905Silver flowering stage0.222
SRR8316906Gold flowering stage 0.752
SRR8316907Gold flowering stage 0.092
SRR8316908Gold flowering stage 1.725
SRP132670SRR6706286Control4.457
SRR6706287Light intensity 50%5.076
SRR6706288Light intensity 20%5.094
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.368
CNS0095593Slightly white alabastrum(diploid) 21.696
CNS0095594Slightly white alabastrum(diploid) 31.165
CNS0095595Whole white alabastrum(diploid) 20.793
CNS0095596Whole white alabastrum(diploid) 30.376
CNS0095597Whole white alabastrum(diploid) 40.875
CNS0095598Silvery flower (diploied) 12.128
CNS0095599Silvery flower (diploied) 22.165
CNS0095600Silvery flower (diploied) 32.143
CNS0095601Golden flower (diploid) 11.634
CNS0095602Golden flower (diploid) 23.207
CNS0095603Golden flower (diploid) 32.994
CNS0095604Slightly white alabastrum(tetraploid) 14.235
CNS0095605Slightly white alabastrum(tetraploid) 21.769
CNS0095606Slightly white alabastrum(tetraploid) 37.928
CNS0095607Whole white alabastrum(tetraploid) 12.014
CNS0095608Whole white alabastrum(tetraploid) 20.726
CNS0095609Whole white alabastrum(tetraploid) 32.278
CNS0095610Silvery flower (tetraploid) 13.308
CNS0095611Silvery flower (tetraploid) 24.545
CNS0095612Silvery flower (tetraploid) 32.358
CNS0095613Golden flower (tetraploid) 10.608
CNS0095614Golden flower (tetraploid) 21.604
CNS0095615Golden flower (tetraploid) 31.523
CRA001975CRR073297Stem 18.281
CRR073298Stem 24.524
CRR073299Stem 35.192
CRR073300Leaf 16.503
CRR073301Leaf 24.705
CRR073302Leaf 32.399
CRR073303Juvenile bud 11.992
CRR073304Juvenile bud 21.552
CRR073305Juvenile bud 33.704
CRR073306Third green 10.164
CRR073307Third green 20.081
CRR073308Third green 30.371
CRR073309Second white 10.087
CRR073310Second white 20.259
CRR073311Second white 30.279
CRR073312Silver flowering 10.161
CRR073313Silver flowering 20.314
CRR073314Silver flowering 30.819
CRR073315Gold flowering 11.138
CRR073316Gold flowering 22.569
CRR073317Gold flowering 33.143
CRR073318Tawny withering 12.951
CRR073319Tawny withering 21.551
CRR073320Tawny withering 32.912