Gene detail

Detail information of GWHGAAZE023887

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEI83425.1	1.6494E-111	transcription factor R2R3-MYB1 [Camellia sinensis]
Swissprot	tr\|P81395\|MYB30_ANTMA	6E-103	Myb-related protein 330
trEMBL	tr\|F8SPG8\|F8SPG8_CAMSI	6E-112	Transcription factor R2R3-MYB1 {ECO:0000313\|EMBL:AEI83425.1}
TAIR10	AT4G38620.1	2E-69	myb domain protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	28834347	28836183	+
GWHAAZE00000007	mRNA	28834347	28836183	+
GWHAAZE00000007	exon	28834347	28834479	+
GWHAAZE00000007	exon	28834780	28834909	+
GWHAAZE00000007	exon	28835649	28836183	+
GWHAAZE00000007	CDS	28834347	28834479	+
GWHAAZE00000007	CDS	28834780	28834909	+
GWHAAZE00000007	CDS	28835649	28836183	+

Transcript Sequence
>GWHTAAZE023919 ATGGGACGTTCGCCTTGCTGTGAGAAAGCCCACACGAACAAAGGCGCATGGACAAAAGAGGAAGACCAACGTCTCATCAATTACATCCGTCTTCACGGCGAAGGCTGCTGGCGTTCCCTTCCTAAAGCCGCCGGATTACTTAGGTGCGGGAAGAGTTGCAGATTGAGGTGGATAAATTACCTAAGGCCGGACCTAAAGAGAGGGAATTTCACTGAAGAAGAAGATGAGCTTATCATCAAGCTTCACTCTTTGCTCGGAAACAAGTGGTCTTTAATAGCGAGTCGATTGCCTGGAAGAACAGATAACGAAATCAAGAACTACTGGAACACTCACATTAAACGCAAGCTTATTAGCCAAGGACTCGACCCTCAAACTCATTATCCACTCACCGCCACCAACACCACCACAGCCACCGCCAATATCTGCCTAGACTTTAGGAACAATCCTCCACCATCTTCACCGGCATCCGACAAAACACTACCGGGTCAACACAGGCGAGTCAAACTCGAGTCTGACTCGGCAGAAGAGGGCAAGTGCAATAGTGGCACAACAGAAGAGATTACTCACCCACAGCAACCTTGCCGAAATGACCGAAACGCCCTTGATCTCAACTTGTCAATTGGGCTACCGAGTCAGGATGAGTCAGGAAACAACACCTCGGCTAAATCGGTTGAGTCGAGCCCGTTTGTGATTGTGGCTCAGCCAGGGGTGTGTTTGTGTTTTCAGTTAGGGTTACAAAAGGGTCAGGTGTGTAGTAATTGTGGCCAAAATAAAAATGGGTTTTTGAGATATTGCTGA

Network for GWHGAAZE023887

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	5.00E-15
PF00249.32	Myb_DNA-binding	67	111	8.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.030
	SRR3591706	second leaf	0.958
	SRR3591707	mature leaf	1.387
	SRR3591708	Shoot apex	3.855
	SRR3591709	Stem	21.259
	SRR3591710	White floral bud	13.097
	SRR3591711	White flower	2.508
	SRR3591712	Green floral bud	16.296
	SRR3591713	Yellow flower	3.896
SRP173429	SRR8316895	Juvenile bud stage	7.584
	SRR8316896	Juvenile bud stage	9.122
	SRR8316897	Juvenile bud stage	4.400
	SRR8316894	Third green stage	3.443
	SRR8316900	Third green stage	12.470
	SRR8316901	Third green stage	10.516
	SRR8316898	Complete white stage	1.539
	SRR8316899	Complete white stage	9.615
	SRR8316903	Complete white stage	5.879
	SRR8316902	Silver flowering stage	1.155
	SRR8316904	Silver flowering stage	2.746
	SRR8316905	Silver flowering stage	1.193
	SRR8316906	Gold flowering stage	2.547
	SRR8316907	Gold flowering stage	3.022
	SRR8316908	Gold flowering stage	4.665
SRP132670	SRR6706286	Control	8.228
	SRR6706287	Light intensity 50%	8.753
	SRR6706288	Light intensity 20%	8.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.978
	CNS0095593	Slightly white alabastrum(diploid) 2	8.843
	CNS0095594	Slightly white alabastrum(diploid) 3	14.202
	CNS0095595	Whole white alabastrum(diploid) 2	8.665
	CNS0095596	Whole white alabastrum(diploid) 3	8.674
	CNS0095597	Whole white alabastrum(diploid) 4	14.487
	CNS0095598	Silvery flower (diploied) 1	1.570
	CNS0095599	Silvery flower (diploied) 2	3.478
	CNS0095600	Silvery flower (diploied) 3	2.442
	CNS0095601	Golden flower (diploid) 1	1.162
	CNS0095602	Golden flower (diploid) 2	2.975
	CNS0095603	Golden flower (diploid) 3	2.805
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.994
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.902
	CNS0095610	Silvery flower (tetraploid) 1	5.090
	CNS0095611	Silvery flower (tetraploid) 2	2.144
	CNS0095612	Silvery flower (tetraploid) 3	5.781
	CNS0095613	Golden flower (tetraploid) 1	4.047
	CNS0095614	Golden flower (tetraploid) 2	8.208
	CNS0095615	Golden flower (tetraploid) 3	4.624
CRA001975	CRR073297	Stem 1	6.549
	CRR073298	Stem 2	4.454
	CRR073299	Stem 3	4.013
	CRR073300	Leaf 1	10.294
	CRR073301	Leaf 2	9.016
	CRR073302	Leaf 3	3.336
	CRR073303	Juvenile bud 1	9.506
	CRR073304	Juvenile bud 2	7.163
	CRR073305	Juvenile bud 3	9.195
	CRR073306	Third green 1	3.919
	CRR073307	Third green 2	5.983
	CRR073308	Third green 3	5.545
	CRR073309	Second white 1	1.757
	CRR073310	Second white 2	2.182
	CRR073311	Second white 3	3.713
	CRR073312	Silver flowering 1	5.515
	CRR073313	Silver flowering 2	11.556
	CRR073314	Silver flowering 3	6.643
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	1.002
	CRR073317	Gold flowering 3	1.264
	CRR073318	Tawny withering 1	46.356
	CRR073319	Tawny withering 2	41.715
	CRR073320	Tawny withering 3	35.409