Gene detail

Detail information of GWHGAAZE023897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHF98930.1	0	E3 ubiquitin-protein ligase [Gossypium arboreum]
COG	YP_270567.1	0.000004	serine protease
Swissprot	tr\|Q8VZ14\|RMR2_ARATH	2E-147	Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (Precursor)
trEMBL	tr\|A0A067GVY0\|A0A067GVY0_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO83893.1}
TAIR10	AT1G71980.1	6E-109	Protease-associated (PA) RING/U-box zinc finger family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	29109432	29124190	+
GWHAAZE00000007	mRNA	29109432	29124190	+
GWHAAZE00000007	exon	29109432	29109535	+
GWHAAZE00000007	exon	29113598	29113680	+
GWHAAZE00000007	exon	29116172	29116396	+
GWHAAZE00000007	exon	29121568	29121984	+
GWHAAZE00000007	exon	29123544	29124190	+
GWHAAZE00000007	CDS	29109432	29109535	+
GWHAAZE00000007	CDS	29113598	29113680	+
GWHAAZE00000007	CDS	29116172	29116396	+
GWHAAZE00000007	CDS	29121568	29121984	+
GWHAAZE00000007	CDS	29123544	29124190	+

Transcript Sequence
>GWHTAAZE023929 ATGAGGCGGTACAAGAGGTTAAGAGGCCTAGGGGTGGGGTGGGGTGGAGGGATAAAGCTTTATTCCAAAACTGGAATACTAAGTGGATTTGAGAAAGTTTGCAGATTTGGTGAATTCTTGGACCATTTGCCGGAAATTGGAGGTGTCGGTAGTGAGAACGGTTATGGGAGTTCGCCTCGAGGCTCGGCTCCCACCGTTAAGGGGTCCGGAAAATGTGGCACACTGTATGTTGCAGAACCACTGGATGCTTGTTCACCATTGACTAATAATTTCACTGAAGATATTGTCTCCTCTTCATTTGCCTTGATCATCAGAGGAGGATGTAGCTTTGAGGATAAAATTAGAAGAGCTCAAAATGCAGGGTTCGATGCAGTGATTGTCTACGACAATGAAGACGGTGATTTGGTTGCAAGTTGTGATGCAGTGGCGGGGAATTCAGCCGGAATAAAGATCCATGCTGTATTTGTTACAAAATCTTCGGGCGAAACACTGACGAAGTACGCAGGTGCAAAAGACATGGAACTATGGATAATCCCAACCTTTGAGAACTCGGCATGGTCAATCATGGCCATATCTTTCATTTCTTTACTTGCCATGTCAGCAGTTCTGGCCACTTGTTTCTTCGTTCGTAGGCATCGAATTAGACGAGAACGTCCTCAAGCTTCACGGGTTAGAGAGTTCCATGGGATGAGCAGTCGGCTAGTGAAGGCCATGCCGAGCCTAATATTTACATCTGTTTTAGAGGATAATTGTACTTCAACTACATGCGCTATTTGTCTTGAAGACTATAGTGTTGGGGATAAGCTCAGAATTCTGCCGTGCCGCCACAAATTCCATGCAATTTGTGTTGACGCTTGGCTTACTTCATGGAGAACATTTTGCCCCGTTTGCAAACGTGATGCTAGAACATCCACGGGTGACCCGCCTGCATCTGAACGGACCCCGTTACTTTCATCCACACCAGTTTCCATTGCTTCCTCCTCTGCATTGTCATCTGCCAGATCGTCACTAGCTTCATCCTCAGCCATACAAATAAGCGCGCCGTCATCAGCCCGATCCCCTTCTATATCTCACCTTCATGCCAGCACATCTTACAACCAACACTCTCTTCAATCCTACAGACACTCCCCTTATCTTAGTGTAAGCCAAAGCTCGATAGATTTAAGAAATGCTGCTTCTTCACAACGATACCGAGCTGCCCACTTAGCATCATCGTCTAATTCACTCGGTTACCCTTCTTTATCGCCTCTAAATTCGAGATACATGTCTACTTATATTCCGAGCCCGGCAGATGGTTCGTTGAGTTACATCGGGTCATCTAGTCACCAGCAAAACGCAATGCATTGCAGCGAATCAGCCACAAGCTTTTCTCCATACATCGGGTCCTCTAGTCACCAGCAAAACGCAATGCATTGTAGCGAATCGGCAACAAGTTTTTCTCCATACGCGTCGGCCCAATCTCTTCCGGGTTGTTAA

Network for GWHGAAZE023897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.23	PA	78	164	7.00E-10
PF13639.7	zf-RING_2	255	298	4.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.518
	SRR3591706	second leaf	30.062
	SRR3591707	mature leaf	34.874
	SRR3591708	Shoot apex	52.503
	SRR3591709	Stem	94.475
	SRR3591710	White floral bud	94.228
	SRR3591711	White flower	111.361
	SRR3591712	Green floral bud	88.459
	SRR3591713	Yellow flower	137.895
SRP173429	SRR8316895	Juvenile bud stage	36.745
	SRR8316896	Juvenile bud stage	47.905
	SRR8316897	Juvenile bud stage	21.509
	SRR8316894	Third green stage	20.776
	SRR8316900	Third green stage	66.992
	SRR8316901	Third green stage	66.617
	SRR8316898	Complete white stage	32.949
	SRR8316899	Complete white stage	98.016
	SRR8316903	Complete white stage	61.197
	SRR8316902	Silver flowering stage	43.821
	SRR8316904	Silver flowering stage	67.363
	SRR8316905	Silver flowering stage	31.567
	SRR8316906	Gold flowering stage	102.742
	SRR8316907	Gold flowering stage	116.734
	SRR8316908	Gold flowering stage	108.726
SRP132670	SRR6706286	Control	81.346
	SRR6706287	Light intensity 50%	76.618
	SRR6706288	Light intensity 20%	78.217
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.792
	CNS0095593	Slightly white alabastrum(diploid) 2	61.583
	CNS0095594	Slightly white alabastrum(diploid) 3	52.960
	CNS0095595	Whole white alabastrum(diploid) 2	55.211
	CNS0095596	Whole white alabastrum(diploid) 3	56.290
	CNS0095597	Whole white alabastrum(diploid) 4	57.439
	CNS0095598	Silvery flower (diploied) 1	74.501
	CNS0095599	Silvery flower (diploied) 2	65.917
	CNS0095600	Silvery flower (diploied) 3	146.974
	CNS0095601	Golden flower (diploid) 1	80.513
	CNS0095602	Golden flower (diploid) 2	177.672
	CNS0095603	Golden flower (diploid) 3	167.394
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.299
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.162
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.523
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.750
	CNS0095610	Silvery flower (tetraploid) 1	117.557
	CNS0095611	Silvery flower (tetraploid) 2	149.734
	CNS0095612	Silvery flower (tetraploid) 3	119.282
	CNS0095613	Golden flower (tetraploid) 1	119.727
	CNS0095614	Golden flower (tetraploid) 2	133.525
	CNS0095615	Golden flower (tetraploid) 3	328.639
CRA001975	CRR073297	Stem 1	74.030
	CRR073298	Stem 2	75.759
	CRR073299	Stem 3	86.856
	CRR073300	Leaf 1	93.502
	CRR073301	Leaf 2	90.613
	CRR073302	Leaf 3	79.005
	CRR073303	Juvenile bud 1	108.674
	CRR073304	Juvenile bud 2	103.003
	CRR073305	Juvenile bud 3	119.561
	CRR073306	Third green 1	78.675
	CRR073307	Third green 2	72.442
	CRR073308	Third green 3	83.385
	CRR073309	Second white 1	118.631
	CRR073310	Second white 2	98.087
	CRR073311	Second white 3	86.021
	CRR073312	Silver flowering 1	80.756
	CRR073313	Silver flowering 2	80.293
	CRR073314	Silver flowering 3	57.718
	CRR073315	Gold flowering 1	51.758
	CRR073316	Gold flowering 2	55.844
	CRR073317	Gold flowering 3	62.398
	CRR073318	Tawny withering 1	102.195
	CRR073319	Tawny withering 2	86.356
	CRR073320	Tawny withering 3	105.665