Gene detail

Detail information of GWHGAAZE023907

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAM60857.1	0	dihydrolipoamide S-acetyltransferase, putative [Arabidopsis thaliana]
COG	YP_007122333.1	4E-168	pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Swissprot	tr\|Q9C8P0\|ODP25_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (Precursor)
trEMBL	tr\|F6GY10\|F6GY10_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44848.1}
TAIR10	AT1G34430.1	7E-128	2-oxoacid dehydrogenases acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	29321613	29327731	-
GWHAAZE00000007	mRNA	29321613	29327731	-
GWHAAZE00000007	exon	29327337	29327731	-
GWHAAZE00000007	exon	29326248	29326726	-
GWHAAZE00000007	exon	29325243	29325434	-
GWHAAZE00000007	exon	29324504	29324594	-
GWHAAZE00000007	exon	29322923	29322993	-
GWHAAZE00000007	exon	29321928	29322011	-
GWHAAZE00000007	exon	29321684	29321817	-
GWHAAZE00000007	exon	29321613	29321662	-
GWHAAZE00000007	five_prime_UTR	29327605	29327731	-
GWHAAZE00000007	CDS	29327337	29327604	-
GWHAAZE00000007	CDS	29326248	29326726	-
GWHAAZE00000007	CDS	29325243	29325434	-
GWHAAZE00000007	CDS	29324504	29324594	-
GWHAAZE00000007	CDS	29322923	29322993	-
GWHAAZE00000007	CDS	29321928	29322011	-
GWHAAZE00000007	CDS	29321713	29321817	-
GWHAAZE00000007	three_prime_UTR	29321684	29321712	-
GWHAAZE00000007	three_prime_UTR	29321613	29321662	-

Transcript Sequence
>GWHTAAZE023939 GGCTCACCTTCTCAACACCTCATTCATCCCCACCACCAAATCCCTCCGCCGCCACTCCCCCACTCTCCCCCCACTCACCACCCACTCCAAGAAAACCCTAATTCAGGCGAAGATCCGGGAGATCTTCATGCCGGCTTTAAGCTCCACAATGACCGAGGGGAAAATCGTCTCCTGGGTCAAATCCGAAGGGGATAAGTTGTCCAAGGGTGAGTCCGTGGTTGTCGTCGAGTCTGATAAGGCTGACATGGATGTTGAGACGTTCTACGACGGCTACCTCGCCGCCATTATGGTCGAGGAAGGCGGTGTAGCTACCGTGGGGTCTGCCATCGGTCTCTTGGCTGAGACCGAGGACGAAATCTCCCAGGCTAAGTCCAAGGCTGCCACTTCAGGTTCAGCGTCTTCTTCTACGAATGTCATTTCAGATTCAGCTCCCCCTCCTCCTCCTCGTCCAGTGGAGGCTGCCGTAGCAGATTCAGCTCCTGCACCAGTGCCGGTGGCTAAGGCTACTCCTCCGGTGGCGGTGGCATCAGCAGTGCATCCGGCGTCCTTGGGAGGGAAGAGGATAGTGGCATCGCCTTACGCAAAAAAGAAGGCGAAGGAGTTGGGTGTGGATTTGAGTGGGATGGTGGGGAGTGGGCCAATGGGGAGGATTGTTGCTAAGGATGTTGAGGCTGCCGTGGCAGCGGCTGCCAGTGGTGGTGCGGTAGAGGCAGCGAAGGTTCCGGCAAGTCCGGGGGTTGAGTTGGGTTCAGTTGTTCCATTTACAGCAATGCAGGCAGCTGTGAGTAGGAATATGGTGGAGAGTTTAGGAGTGCCTACTTTCAGAGTTGGGTACACTATTTCCACTGATGCGCTTGATGCTCTCTACAAGAAGGTTAAGTCAAAGGGGGTGACTATGACGGCATTACTAGCAAAGGCAACCGCACTTGCATTGGCTAAGCACCCGGTAGTGAATTCAAGTTGCAGAGACGGTAAGAGCTTTACGTATAACAGCAGTATCAACATTGCTGTTGCGGTGGCCATAGATGGTGGGTTGATTACGCCGGTGCTTCAGGATGCTGATAAGGTTGATTTGTATTCATTGTCAAGAAAATGGAAAGAGTTAGTCGATAAGGCACGGCGGGCAAAGCAGCTACAACCTCAAGAATACACTACAGGTACTTTTACGCTGTCTAACCTAGGAATGTTTGGCGTGGATCGCTTTGATGCCATCTTACCACCAGGAACTGGTGCGATCATGGCTGTCGGAGCATCTGAACCCACGGTCGTTGCCACCAAGGATGGCCGGATCGGCATGAAAAGCCAGATGCAGGTAAATGTGACCGCTGATCATCGTGTCATATACGGTGCTGATCTTGCTTCGTTCTTGCAAACCCTAGCAAAGATAATCGAGGACCCTAAAGATCTCACTCTGTAATTTTGCTCGGAGATTACTTTCCTTTTATATCTCTTTAGATTATCATATCCTCCATCTTGATGAACACAGTTATTTCAGA

Network for GWHGAAZE023907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	1	67	1.20E-14
PF02817.18	E3_binding	146	181	3.00E-12
PF00198.24	2-oxoacid_dh	209	428	1.30E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00627	DLAT, aceF, pdhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.066
	SRR3591706	second leaf	42.595
	SRR3591707	mature leaf	14.955
	SRR3591708	Shoot apex	46.955
	SRR3591709	Stem	13.075
	SRR3591710	White floral bud	16.508
	SRR3591711	White flower	11.977
	SRR3591712	Green floral bud	35.992
	SRR3591713	Yellow flower	9.550
SRP173429	SRR8316895	Juvenile bud stage	31.001
	SRR8316896	Juvenile bud stage	47.934
	SRR8316897	Juvenile bud stage	18.463
	SRR8316894	Third green stage	13.454
	SRR8316900	Third green stage	43.808
	SRR8316901	Third green stage	39.688
	SRR8316898	Complete white stage	9.098
	SRR8316899	Complete white stage	26.463
	SRR8316903	Complete white stage	10.736
	SRR8316902	Silver flowering stage	7.580
	SRR8316904	Silver flowering stage	7.748
	SRR8316905	Silver flowering stage	5.203
	SRR8316906	Gold flowering stage	15.089
	SRR8316907	Gold flowering stage	13.579
	SRR8316908	Gold flowering stage	14.475
SRP132670	SRR6706286	Control	32.809
	SRR6706287	Light intensity 50%	33.593
	SRR6706288	Light intensity 20%	38.858
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.893
	CNS0095593	Slightly white alabastrum(diploid) 2	33.971
	CNS0095594	Slightly white alabastrum(diploid) 3	34.998
	CNS0095595	Whole white alabastrum(diploid) 2	23.084
	CNS0095596	Whole white alabastrum(diploid) 3	33.577
	CNS0095597	Whole white alabastrum(diploid) 4	20.109
	CNS0095598	Silvery flower (diploied) 1	13.733
	CNS0095599	Silvery flower (diploied) 2	16.766
	CNS0095600	Silvery flower (diploied) 3	17.999
	CNS0095601	Golden flower (diploid) 1	13.277
	CNS0095602	Golden flower (diploid) 2	14.753
	CNS0095603	Golden flower (diploid) 3	15.484
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.387
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.989
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.698
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.682
	CNS0095610	Silvery flower (tetraploid) 1	17.015
	CNS0095611	Silvery flower (tetraploid) 2	18.215
	CNS0095612	Silvery flower (tetraploid) 3	17.929
	CNS0095613	Golden flower (tetraploid) 1	7.985
	CNS0095614	Golden flower (tetraploid) 2	14.056
	CNS0095615	Golden flower (tetraploid) 3	9.151
CRA001975	CRR073297	Stem 1	38.648
	CRR073298	Stem 2	38.396
	CRR073299	Stem 3	38.112
	CRR073300	Leaf 1	36.439
	CRR073301	Leaf 2	41.975
	CRR073302	Leaf 3	39.857
	CRR073303	Juvenile bud 1	39.982
	CRR073304	Juvenile bud 2	32.920
	CRR073305	Juvenile bud 3	28.946
	CRR073306	Third green 1	7.932
	CRR073307	Third green 2	6.785
	CRR073308	Third green 3	6.440
	CRR073309	Second white 1	9.029
	CRR073310	Second white 2	5.639
	CRR073311	Second white 3	6.108
	CRR073312	Silver flowering 1	7.697
	CRR073313	Silver flowering 2	8.030
	CRR073314	Silver flowering 3	7.678
	CRR073315	Gold flowering 1	19.090
	CRR073316	Gold flowering 2	32.960
	CRR073317	Gold flowering 3	20.431
	CRR073318	Tawny withering 1	30.269
	CRR073319	Tawny withering 2	17.822
	CRR073320	Tawny withering 3	38.869