Gene detail

Detail information of GWHGAAZE023966

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268049.1	0	nitrate reductase [NADH]-like [Vitis vinifera]
COG	YP_001545630.1	8E-52	sulfite oxidase
Swissprot	tr\|P36859\|NIA_PETHY	0	Nitrate reductase [NADH]
trEMBL	tr\|F6H0M5\|F6H0M5_VITVI	0	Nitrate reductase {ECO:0000256\|PIRNR:PIRNR000233}
TAIR10	AT1G77760.1	0	nitrate reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	30834453	30839761	+
GWHAAZE00000007	mRNA	30834453	30839761	+
GWHAAZE00000007	exon	30834453	30835446	+
GWHAAZE00000007	exon	30835939	30836079	+
GWHAAZE00000007	exon	30836652	30836869	+
GWHAAZE00000007	exon	30838033	30838668	+
GWHAAZE00000007	exon	30839076	30839342	+
GWHAAZE00000007	exon	30839438	30839761	+
GWHAAZE00000007	CDS	30834453	30835446	+
GWHAAZE00000007	CDS	30835939	30836079	+
GWHAAZE00000007	CDS	30836652	30836869	+
GWHAAZE00000007	CDS	30838033	30838668	+
GWHAAZE00000007	CDS	30839076	30839342	+
GWHAAZE00000007	CDS	30839438	30839761	+

Transcript Sequence
>GWHTAAZE023998 ATGGCGGCTTCCGTTGAAAACCGCCAGTTCAGCCGCCTCGATTCCTTCATGTCCGGCGCAAACCACCGGTCCGGTTCCCCGGTTCGCAGCTGCAATTTCCCTTCCAACACCGAACCCAAACGCAAAATCAAACCGTTGGGGGTCGAAGATACATCGAGCAGCGACGATGACGACGATGAAAATAATTACACAGATACCATTGAGAAGGCAAAAGCAGAGCTAGAACCTTCAGTGTTAGATTCGAGGGATCAATTAACGGCCGACAATTGGATTGAACGGAATCCGTCGATGGTCCGACTCACGGGTAAACACCCGTTCAATTCTGAGCCACCGCTGGCTCGACTAATGCACCATGGGTTCATAACCCCGGTGCCTCTACATTATGTCCGCAACCACGGTCCAGTCCCTCACGCCTCCTGGTCCGATTGGACCGTGGAGGTTTGTGGACTGGTAAAGAGACCTGCACGCTTTACCATGGAAGAACTCACAACAGAATTCCCTAATATAGAGTTCCCGGCAACATTAGTCTGTGCCGGAAACAGAAGGAAAGAACAAAACATGGTCAAGAAAACCATCGGGTTCAATTGGGGGGCGGCCGGAATTTCCACGTCTGTGTGGAAAGGCGTGCCCCTACGCCACGTGCTAAAGAGGTGTGGGATTTTTAGCAGAAAAAAAGGAGCAATTAATGTGTGTTTTGAAGGCGCAGAAGATTTGCCTGGAGGGGGTGGGGCAAAGTATGGGACAAGTATAAAGAAGGAATTTGCTATGGATCCGGCGACGGATATTATAATTGCGTATATGCAGAACGGGGAGAGACTGGCCCCGGATCATGGTTTTCCGGTGAGAATGATAATTCCCGGGTTCATCGGAGGGAGGATGGTGAAATGGTTGAAGAGGATAATTGTAACAACACAAGAATCGGACAGTTATTATCATTTCAAGGATAATAGAGTGCTTCCATCCCACGTGGATGCTGAGCTAGCCAACTCCGAAGCTTGGTGGTACAAGCCAGAGTACTTAATCAACGAGTTGAACATAAACTCGGTTATTACTACGCCGTGTCACGAGGAGATCTTGCCGATTAATTCGTGGACAACTCAGCTTCCTTACACGTTGAGGGGCTACGCTTATTCAGTGACACGTGTGGAGGTAACATTGGATGGAGGGGAGACGTGGCACGTGTGCAATGTGGACCACCCAGAGAAGCCGAACAAGTACGGCAAATACTGGTGCTGGTGCTTCTGGTCACTTGAAGTTGAGGTTTTGGACCTACTTGGTGCCAAAGAAATTGCTGTTCGAGCCTGGGACCAAACCCTCAACACACAACCCGAGAAACTCATTTGGAACCTCATGGGCATGATGAACAATTGCTGGTTTCGGGTTAAAATTAATGTATGCAAGCCACACAAAGGCGAAATAGGGCTCATATTCGAACACCCGACGCAACCCGGTAACCAATCAGGTGGGTGGATGGCTCGTGAGAGGCACCTCGAGTCCTCGGCCGATTCGAACAATACCCTTAAAAAGAGTCTCTCAACACCGTTCATGAACACCTCCTCCAAAGTTTACTCGGTCTCTGATTTGAAAAAACACAACTCGCCTGACTCGGCTTGGATTGTGGTCCATGGCCACGTATACGACTGCACGCGGTTCCTCAAAGACCACCCTGGAGGGGCCGACAGTATCCTCATCAATGCAGGGACTGATTGCACTGAGGAGTTTGATGCCATTCACTCCGATAAGGCTAAGAATTTACTTGAGGAGTACCGGATCGGAGAGTTGATATCCAGCGGTTACATTTCTGATTCGCCAAATAATTCGGTCCATGGTGGTTCCAGCTTGACCCATATGGCTCCTATTACAGAACTTGCTCCAGCGAGAAATATAGCGCTTGTCCCTCGACAAAAAGTCCCTTGCAAGTTGGTGGCAAAGACTTCGCTTTCACATGATGTGAGACTCTTTCGATTCGCATTGCCATTAAAAGATCAGGTACTAGGATTACCTGTCGGAAAGCATATATTTTTGTGCGCAACCATTAATGACAAGCTATGTATGCGAGCATATACACCTACAAGTAGTGTTGATGAAGTGGGTTACTTTGAATTATTAGTAAAGATATATTTCAAAGGTGTAAACACTGAATTTCCTAATGGCGGCCTAATGTCACAATACCTGGACACACTCCCACTAGAATCTTCAATAGATGTGAAGGGTCCACTAGGGCACATTGAATACACAGGGAAGGGAAATTTTATGGATCCCGAAGATGACACTGAGATGAATGTCGTGTATGCGAATCGTACCGAAGATGATATATTAATGAAGGACGAGCTTGATGAGTGGGCTAAAGAGTACCAAGACAGAGTCAAGGTGTGGTATGTTGTTGGGAATACCATAAGGGAGGGATGGAAATACAGCGTGGGAAGGATTGATGAGGGTATTATGAGAGAGCACCTCCCCGGGGCATCCGATGATGTTCTAGCGCTGGTGTGTGGACCGCCACCTATGATTCAATTCGCTGTAAGCCCGAATTTGGAGAAGATGGGGTACGATGTCAAGAATTCTTTGTTGGTGTTTTGA

Network for GWHGAAZE023966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00174.20	Oxidored_molyb	132	311	4.20E-55
PF03404.17	Mo-co_dimer	339	465	8.10E-47
PF00173.29	Cyt-b5	525	594	8.20E-24
PF00970.25	FAD_binding_6	639	745	5.20E-34
PF00175.22	NAD_binding_1	752	840	2.60E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10534	NR	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0042128	biological_process	nitrate assimilation
GO:0006809	biological_process	nitric oxide biosynthetic process
GO:0043546	molecular_function	molybdopterin cofactor binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0050464	molecular_function	nitrate reductase (NADPH) activity
GO:0030151	molecular_function	molybdenum ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.383
	SRR3591706	second leaf	100.554
	SRR3591707	mature leaf	326.851
	SRR3591708	Shoot apex	9.409
	SRR3591709	Stem	19.145
	SRR3591710	White floral bud	54.450
	SRR3591711	White flower	133.521
	SRR3591712	Green floral bud	22.484
	SRR3591713	Yellow flower	148.594
SRP173429	SRR8316895	Juvenile bud stage	13.627
	SRR8316896	Juvenile bud stage	21.141
	SRR8316897	Juvenile bud stage	2.723
	SRR8316894	Third green stage	10.717
	SRR8316900	Third green stage	24.854
	SRR8316901	Third green stage	21.550
	SRR8316898	Complete white stage	18.037
	SRR8316899	Complete white stage	76.338
	SRR8316903	Complete white stage	30.162
	SRR8316902	Silver flowering stage	13.099
	SRR8316904	Silver flowering stage	8.868
	SRR8316905	Silver flowering stage	4.761
	SRR8316906	Gold flowering stage	48.949
	SRR8316907	Gold flowering stage	49.885
	SRR8316908	Gold flowering stage	102.166
SRP132670	SRR6706286	Control	59.338
	SRR6706287	Light intensity 50%	78.911
	SRR6706288	Light intensity 20%	73.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.124
	CNS0095593	Slightly white alabastrum(diploid) 2	20.828
	CNS0095594	Slightly white alabastrum(diploid) 3	9.529
	CNS0095595	Whole white alabastrum(diploid) 2	13.811
	CNS0095596	Whole white alabastrum(diploid) 3	7.611
	CNS0095597	Whole white alabastrum(diploid) 4	13.877
	CNS0095598	Silvery flower (diploied) 1	149.086
	CNS0095599	Silvery flower (diploied) 2	157.910
	CNS0095600	Silvery flower (diploied) 3	117.557
	CNS0095601	Golden flower (diploid) 1	58.007
	CNS0095602	Golden flower (diploid) 2	176.782
	CNS0095603	Golden flower (diploid) 3	169.759
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.785
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.812
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.857
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.969
	CNS0095610	Silvery flower (tetraploid) 1	42.061
	CNS0095611	Silvery flower (tetraploid) 2	70.675
	CNS0095612	Silvery flower (tetraploid) 3	65.057
	CNS0095613	Golden flower (tetraploid) 1	110.632
	CNS0095614	Golden flower (tetraploid) 2	67.477
	CNS0095615	Golden flower (tetraploid) 3	258.426
CRA001975	CRR073297	Stem 1	10.969
	CRR073298	Stem 2	10.590
	CRR073299	Stem 3	5.722
	CRR073300	Leaf 1	20.203
	CRR073301	Leaf 2	21.839
	CRR073302	Leaf 3	14.077
	CRR073303	Juvenile bud 1	19.715
	CRR073304	Juvenile bud 2	10.594
	CRR073305	Juvenile bud 3	38.680
	CRR073306	Third green 1	20.906
	CRR073307	Third green 2	18.277
	CRR073308	Third green 3	20.764
	CRR073309	Second white 1	43.625
	CRR073310	Second white 2	65.314
	CRR073311	Second white 3	97.050
	CRR073312	Silver flowering 1	390.450
	CRR073313	Silver flowering 2	537.219
	CRR073314	Silver flowering 3	548.857
	CRR073315	Gold flowering 1	6.912
	CRR073316	Gold flowering 2	9.794
	CRR073317	Gold flowering 3	10.110
	CRR073318	Tawny withering 1	11.691
	CRR073319	Tawny withering 2	9.972
	CRR073320	Tawny withering 3	3.457