Gene detail

Detail information of GWHGAAZE023988

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074870.1	5.20413E-45	PREDICTED: glycine-rich protein 2-like [Sesamum indicum]
COG	YP_003624167.1	2E-18	Cold shock protein
Swissprot	tr\|P27484\|GRP2_NICSY	3E-28	Glycine-rich protein 2
trEMBL	tr\|B9H7B9\|B9H7B9_POPTR	8E-43	Uncharacterized protein {ECO:0000313\|EMBL:EEE94420.2}
TAIR10	AT4G36020.1	4E-19	cold shock domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	31751695	31752303	+
GWHAAZE00000007	mRNA	31751695	31752303	+
GWHAAZE00000007	exon	31751695	31751917	+
GWHAAZE00000007	exon	31751948	31752303	+
GWHAAZE00000007	CDS	31751695	31751917	+
GWHAAZE00000007	CDS	31751948	31752303	+

Transcript Sequence
>GWHTAAZE024020 ATGGCGGAGAATGGGAGATCCACCGGGACGGTGAAGTGGTTCAGCGGCCAAAAGGGGTTTGGATTCATCGCCTCCGATGCTGGCGGAGAGGATTTGTTCGTCCACCAATCGGAGATCCGGTCGGAAGGGTTTCGCACCCTCCGGGAGGGTCAAAGGGTGGAGTTTTTGGTGGATTCCGGCGAAGATGGCCGGACAAAAGCCGTTGATGTGGTGGGTCTAGCAGGCGCAGCCGCGCGCGGCGGTGATGGTGGCGGCGGAAGGGGTGGTGGGAGGCGGGTGTTTGGTGGGAGGGGTGGGTACGGGAGGGGCGGTGGTGGGAGAGGTGGGAGGTGGTCCGGTGGCGGCAATGGTGGTGGTCGTGGCAGTGGCGGACTTGAGTGTTATAATTGTGGGGGCATTGGTCACTTAGCTAGGGATTGTGTTGGCGGTGGTGGTGGGAACAGGGGTTATAATGGTGATGGTGGTGGAGGGAGAGGATTTCGCAGCAGCCGTCGTGGTGTTGTTGGTGGTGGAAGGGCATGTTACAATTGTGGTGAGGAAGGGCATTTTGCAAGAGATTGCCCAATTGACCAAAATTGA

Network for GWHGAAZE023988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00313.23	CSD	8	72	2.90E-24
PF00098.24	zf-CCHC	126	140	4.40E-07
PF00098.24	zf-CCHC	172	188	7.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CSD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.255
	SRR3591706	second leaf	18.074
	SRR3591707	mature leaf	10.813
	SRR3591708	Shoot apex	9.744
	SRR3591709	Stem	6.307
	SRR3591710	White floral bud	0.477
	SRR3591711	White flower	1.078
	SRR3591712	Green floral bud	0.762
	SRR3591713	Yellow flower	0.225
SRP173429	SRR8316895	Juvenile bud stage	0.657
	SRR8316896	Juvenile bud stage	1.200
	SRR8316897	Juvenile bud stage	0.172
	SRR8316894	Third green stage	0.097
	SRR8316900	Third green stage	0.524
	SRR8316901	Third green stage	0.293
	SRR8316898	Complete white stage	0.337
	SRR8316899	Complete white stage	0.985
	SRR8316903	Complete white stage	0.500
	SRR8316902	Silver flowering stage	0.131
	SRR8316904	Silver flowering stage	0.199
	SRR8316905	Silver flowering stage	0.025
	SRR8316906	Gold flowering stage	0.974
	SRR8316907	Gold flowering stage	1.160
	SRR8316908	Gold flowering stage	0.339
SRP132670	SRR6706286	Control	1.556
	SRR6706287	Light intensity 50%	0.597
	SRR6706288	Light intensity 20%	0.620
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.875
	CNS0095593	Slightly white alabastrum(diploid) 2	1.071
	CNS0095594	Slightly white alabastrum(diploid) 3	1.485
	CNS0095595	Whole white alabastrum(diploid) 2	1.649
	CNS0095596	Whole white alabastrum(diploid) 3	1.208
	CNS0095597	Whole white alabastrum(diploid) 4	1.402
	CNS0095598	Silvery flower (diploied) 1	1.927
	CNS0095599	Silvery flower (diploied) 2	0.792
	CNS0095600	Silvery flower (diploied) 3	0.803
	CNS0095601	Golden flower (diploid) 1	3.208
	CNS0095602	Golden flower (diploid) 2	0.737
	CNS0095603	Golden flower (diploid) 3	0.586
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.354
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.391
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.778
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.350
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.203
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.132
	CNS0095612	Silvery flower (tetraploid) 3	0.221
	CNS0095613	Golden flower (tetraploid) 1	0.015
	CNS0095614	Golden flower (tetraploid) 2	0.040
	CNS0095615	Golden flower (tetraploid) 3	0.013
CRA001975	CRR073297	Stem 1	3.109
	CRR073298	Stem 2	2.212
	CRR073299	Stem 3	2.291
	CRR073300	Leaf 1	0.210
	CRR073301	Leaf 2	1.411
	CRR073302	Leaf 3	0.603
	CRR073303	Juvenile bud 1	0.337
	CRR073304	Juvenile bud 2	0.093
	CRR073305	Juvenile bud 3	0.792
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.179
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.094
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	12.833
	CRR073316	Gold flowering 2	14.172
	CRR073317	Gold flowering 3	26.184
	CRR073318	Tawny withering 1	1.393
	CRR073319	Tawny withering 2	1.480
	CRR073320	Tawny withering 3	2.377