Gene detail

Detail information of GWHGAAZE023993

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	4.35544E-77	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	4E-21	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|B9RI98\|B9RI98_RICCO	2E-77	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G16930.1	3E-18	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	31956994	31959035	+
GWHAAZE00000007	mRNA	31956994	31959035	+
GWHAAZE00000007	exon	31956994	31957884	+
GWHAAZE00000007	exon	31957996	31958139	+
GWHAAZE00000007	exon	31958736	31959035	+
GWHAAZE00000007	CDS	31956994	31957884	+
GWHAAZE00000007	CDS	31957996	31958139	+
GWHAAZE00000007	CDS	31958736	31959035	+

Transcript Sequence
>GWHTAAZE024025 TGCAGCACAAGCAGAAATATTCTTTTGGCAGATCGGATTAGCGGGTTGCCAGATGACATTCTTATGACTATTCTGTCGCACTTGACGATGAAAGAAGCGGCAAGTACCACCGTTCTCTCTCATAGATGGAACAACTTATGGATGCACACCACTGGTTGCTTGGACTTTGACGATTCAAGAACTTTAACCTTTTGGACTATTAAGCTTTATATATCGAGTCGTTTTAGGGAACCGGATCTTGTAGAAGAGGGGCCCTTGCTTGAAGAAGATAGGGTCCTGTTTGCTGGATGGGTAAATCGGATTTTGAAGTTGCATAAGGGTGCCACAATCGACAGATTTAGAGTCCATTTTGATTTGGATTCAAGTTCTAGATCTGATATTGATAGCTGGATTAACTTTGCGTTGCAAAAGAAAGCAAGGAGACTTGAACTGGACTTGGACCGATTGTTTAAACCTTGGGAGGGCATCTACCCTTTTCCAGAAAAATCTGTTATTGGCCATCCAACCATCAATTCCCTGACCTATCTCAAGTTGAACTATGTAGACGTGACTCGGGAACTACTTGAGTACATTTTATCCAACTGCCCTGTTCTTGAATTTGTATGCGTTAGATGCCCCCGTAGTCTGGTTGGTGCCAAAGTTGATGCCGCCTCTCCAAAGCTCCATTATTTGGAGATATCCTGCCACCATGTGGAGTTTCTAGAGATTTCTTCTGCAATAAATCTTAGGACGTTGAAATACTTTGGACCTGAAGCAAGCCTTTGTTTCAAGAATGCTCCAAATCTTATTGATGTATCATTCGGGGGAGCCTACTGTAAAGACATTGCTCAGAAATTCCATGGGCATTCCTTCTCTCAGATAGAGAAACTTAAGTTGAACATGAGTTGTTATATTTTCGAGACCTATGACAGATTCCCCATATTAAAAAATCTCAAGCAATTGGAATTGGTAGTGAAGGGATGGGATCCACACGGTGTCCTTCACTATGCAACACTCCTTGAGAAATGCCCAATGTTGTATAGACTTTGCGTGCAGTTCAATTGGTTTGAGGACCCGAAAGAAATAGAGATCCAGGAGAGAGAGTGTAGGCTCGAATGTCTCAAGTTTATTGAAATGTCGGTATTTCGTGGGAGTAGAACTGATCTGGAACTGGCTACATTTCTGATTAAAAATTCTCCATGTCTCGAGAAGATTATTATTGATACTCGCGATCCTCCTAGTTACTCAGGAACCTTGTGGGAAGGACTCCAGAAAGACAGCGTGGCCGCCCAGGAGTCTGCAACACAGCTGCTGTCGACTAAACTATCTCCGGGTGTTGAATACCTTATACTTTGA

Network for GWHGAAZE023993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	47	8.50E-05
PF08387.11	FBD	361	400	3.60E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.035
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.113
	SRR3591708	Shoot apex	0.066
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.656
	SRR3591711	White flower	0.845
	SRR3591712	Green floral bud	0.162
	SRR3591713	Yellow flower	0.915
SRP173429	SRR8316895	Juvenile bud stage	0.346
	SRR8316896	Juvenile bud stage	0.528
	SRR8316897	Juvenile bud stage	0.217
	SRR8316894	Third green stage	0.152
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.317
	SRR8316898	Complete white stage	0.225
	SRR8316899	Complete white stage	0.053
	SRR8316903	Complete white stage	0.343
	SRR8316902	Silver flowering stage	0.123
	SRR8316904	Silver flowering stage	0.204
	SRR8316905	Silver flowering stage	0.173
	SRR8316906	Gold flowering stage	0.603
	SRR8316907	Gold flowering stage	0.053
	SRR8316908	Gold flowering stage	0.285
SRP132670	SRR6706286	Control	0.085
	SRR6706287	Light intensity 50%	0.083
	SRR6706288	Light intensity 20%	0.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.433
	CNS0095593	Slightly white alabastrum(diploid) 2	0.293
	CNS0095594	Slightly white alabastrum(diploid) 3	0.403
	CNS0095595	Whole white alabastrum(diploid) 2	0.122
	CNS0095596	Whole white alabastrum(diploid) 3	0.560
	CNS0095597	Whole white alabastrum(diploid) 4	0.284
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.011
	CNS0095600	Silvery flower (diploied) 3	0.020
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.061
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.313
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.816
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.494
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.197
	CNS0095610	Silvery flower (tetraploid) 1	0.144
	CNS0095611	Silvery flower (tetraploid) 2	0.386
	CNS0095612	Silvery flower (tetraploid) 3	0.631
	CNS0095613	Golden flower (tetraploid) 1	0.313
	CNS0095614	Golden flower (tetraploid) 2	0.198
	CNS0095615	Golden flower (tetraploid) 3	0.194
CRA001975	CRR073297	Stem 1	0.369
	CRR073298	Stem 2	0.307
	CRR073299	Stem 3	0.304
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.064
	CRR073302	Leaf 3	0.040
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.261
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.519
	CRR073309	Second white 1	0.369
	CRR073310	Second white 2	0.182
	CRR073311	Second white 3	0.197
	CRR073312	Silver flowering 1	0.194
	CRR073313	Silver flowering 2	0.347
	CRR073314	Silver flowering 3	0.321
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.064
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.039