Gene detail

Detail information of GWHGAAZE023999

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664254.1	3.4061E-117	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q7XJS0\|ASHR1_ARATH	7E-95	Histone-lysine N-methyltransferase ASHR1
trEMBL	tr\|E0CRB7\|E0CRB7_VITVI	4E-117	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19071.3}
TAIR10	AT2G17900.1	9E-79	SET domain group 37

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	32329940	32340466	+
GWHAAZE00000007	mRNA	32329940	32340466	+
GWHAAZE00000007	exon	32329940	32330142	+
GWHAAZE00000007	exon	32335909	32336043	+
GWHAAZE00000007	exon	32336332	32336386	+
GWHAAZE00000007	exon	32336500	32336618	+
GWHAAZE00000007	exon	32338839	32338927	+
GWHAAZE00000007	exon	32339219	32339300	+
GWHAAZE00000007	exon	32339404	32339508	+
GWHAAZE00000007	exon	32339915	32340005	+
GWHAAZE00000007	exon	32340363	32340466	+
GWHAAZE00000007	five_prime_UTR	32329940	32330142	+
GWHAAZE00000007	five_prime_UTR	32335909	32336001	+
GWHAAZE00000007	CDS	32336002	32336043	+
GWHAAZE00000007	CDS	32336332	32336386	+
GWHAAZE00000007	CDS	32336500	32336618	+
GWHAAZE00000007	CDS	32338839	32338927	+
GWHAAZE00000007	CDS	32339219	32339300	+
GWHAAZE00000007	CDS	32339404	32339508	+
GWHAAZE00000007	CDS	32339915	32340005	+
GWHAAZE00000007	CDS	32340363	32340466	+

Transcript Sequence
>GWHTAAZE024031 CGGACAGCAACTCAAAGTTCTTTGCGTTGTGGAATACACTGGCGAACGTTCACGAAAGTAGTAAACTGCGAGTGTTGTAGAGAGTTTCTTTCTTTCTTTGATAATGGAAGGTTTACAGAGGGAACTATCGAAGCAAGGTTTAACAGTTTCAACTCTGCCCGACAAAGGTCGCTGCCTCTTCTCCGCGCGAGACTTCTCTCCAGAAGTCAGATTGGAAGTTGCATCGCCTTGAATGTCAAGCTCTCTCTAAACTTGACAAGGATAGGTTACAATCTCTTACTCCTTCTATACGATTGATGGTGAAGCTCTACTTACGAAGGAAACTGCAAAATGAGAAGATAATTTCAACTAATGCCACGGACAACTACAATATGGTGGAGGCTTTGGTATCTCATATGTCTGAAATCAATGAGAAGCAGTTAGTATTGTATGCACAGATGGCTAGCCTTGTCAGCTTGATACTCCAGTGGCCTGATATCACTATAAAAGAGATTGCAGAAAACTTTTCCAAGCTTGCATGCAATGCCCATACAATTTGTGACACTGAACTGAGACCTCTCGGGACAGGCCTGTATCCTGTCATTTCCATTATCAATCACAGCTGCTTGCCCAATTCCGTGCTGGTATTTGAGGGAAGAATGGCAGTGGTTCGTGCTGTGCAAAATATACCAAAAGGTACTGAGGTATTTATAAGTTACATAGAGACGGCAGGAAGTACAATGACTCGACAGAAAGCTCTCAAAGAACAGTACTACTTCTCTTGCACTTGTCCTCGCTGCATAAAAGTGGGCCAGTATGATGATATTGAAGAAAGTGCAACATTGGAGGGTTACAGGTGCAAAGATAATGAATGCGATGGCTTCTTGCTTCGTGATTCTGGGGTGTACCATGGTCCAATTGGTGCACAGTTTTTGGATCGGACCAAGATGGTTGGTTTTGCAATACCAGAAAGCGGACCACACTGGACTAATTTATGGCTTTAG

Network for GWHGAAZE023999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	53	134	2.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.992
	SRR3591706	second leaf	2.256
	SRR3591707	mature leaf	3.294
	SRR3591708	Shoot apex	2.891
	SRR3591709	Stem	2.267
	SRR3591710	White floral bud	2.452
	SRR3591711	White flower	2.488
	SRR3591712	Green floral bud	2.435
	SRR3591713	Yellow flower	2.053
SRP173429	SRR8316895	Juvenile bud stage	2.596
	SRR8316896	Juvenile bud stage	3.784
	SRR8316897	Juvenile bud stage	0.896
	SRR8316894	Third green stage	1.739
	SRR8316900	Third green stage	4.399
	SRR8316901	Third green stage	3.549
	SRR8316898	Complete white stage	1.320
	SRR8316899	Complete white stage	6.004
	SRR8316903	Complete white stage	3.121
	SRR8316902	Silver flowering stage	2.366
	SRR8316904	Silver flowering stage	3.698
	SRR8316905	Silver flowering stage	0.954
	SRR8316906	Gold flowering stage	5.101
	SRR8316907	Gold flowering stage	4.600
	SRR8316908	Gold flowering stage	3.681
SRP132670	SRR6706286	Control	5.695
	SRR6706287	Light intensity 50%	4.722
	SRR6706288	Light intensity 20%	5.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.103
	CNS0095593	Slightly white alabastrum(diploid) 2	1.691
	CNS0095594	Slightly white alabastrum(diploid) 3	1.721
	CNS0095595	Whole white alabastrum(diploid) 2	1.832
	CNS0095596	Whole white alabastrum(diploid) 3	1.675
	CNS0095597	Whole white alabastrum(diploid) 4	1.401
	CNS0095598	Silvery flower (diploied) 1	2.011
	CNS0095599	Silvery flower (diploied) 2	2.667
	CNS0095600	Silvery flower (diploied) 3	3.899
	CNS0095601	Golden flower (diploid) 1	3.138
	CNS0095602	Golden flower (diploid) 2	2.816
	CNS0095603	Golden flower (diploid) 3	4.146
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.321
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.042
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.575
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.641
	CNS0095610	Silvery flower (tetraploid) 1	5.235
	CNS0095611	Silvery flower (tetraploid) 2	3.261
	CNS0095612	Silvery flower (tetraploid) 3	2.551
	CNS0095613	Golden flower (tetraploid) 1	2.530
	CNS0095614	Golden flower (tetraploid) 2	4.647
	CNS0095615	Golden flower (tetraploid) 3	2.767
CRA001975	CRR073297	Stem 1	3.843
	CRR073298	Stem 2	3.094
	CRR073299	Stem 3	1.313
	CRR073300	Leaf 1	4.888
	CRR073301	Leaf 2	3.579
	CRR073302	Leaf 3	2.420
	CRR073303	Juvenile bud 1	3.816
	CRR073304	Juvenile bud 2	1.434
	CRR073305	Juvenile bud 3	2.514
	CRR073306	Third green 1	0.133
	CRR073307	Third green 2	0.542
	CRR073308	Third green 3	0.661
	CRR073309	Second white 1	0.529
	CRR073310	Second white 2	0.211
	CRR073311	Second white 3	0.306
	CRR073312	Silver flowering 1	0.222
	CRR073313	Silver flowering 2	0.268
	CRR073314	Silver flowering 3	0.333
	CRR073315	Gold flowering 1	0.869
	CRR073316	Gold flowering 2	4.118
	CRR073317	Gold flowering 3	1.455
	CRR073318	Tawny withering 1	1.826
	CRR073319	Tawny withering 2	2.594
	CRR073320	Tawny withering 3	1.209