Gene detail

Detail information of GWHGAAZE024020

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074870.1	3.0591E-46	PREDICTED: glycine-rich protein 2-like [Sesamum indicum]
COG	YP_003624167.1	1E-18	Cold shock protein
Swissprot	tr\|O65639\|CSP1_ARATH	3E-29	Cold shock protein 1
trEMBL	tr\|B9H7B9\|B9H7B9_POPTR	5E-43	Uncharacterized protein {ECO:0000313\|EMBL:EEE94420.2}
TAIR10	AT4G36020.1	2E-19	cold shock domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	32906955	32907554	+
GWHAAZE00000007	mRNA	32906955	32907554	+
GWHAAZE00000007	exon	32906955	32907177	+
GWHAAZE00000007	exon	32907208	32907554	+
GWHAAZE00000007	CDS	32906955	32907177	+
GWHAAZE00000007	CDS	32907208	32907554	+

Transcript Sequence
>GWHTAAZE024052 ATGGCGGAGAATGGGAGATCCACCGGGACGGTGAAGTGGTTCAGCGGCCAAAAGGGGTTTGGATTCATCGCCTCCGATGCTGGCGGAGAGGATTTGTTCGTCCACCAATCGGAGATCCGGTCGGAAGGTTTTCGGACCCTCCGGGAGGGTCAAAGGGTGGAGTTTGTGGTGGATTCCGGCGAAGATGGCCGGACAAAAGCCGTTGATGTGGTGGGTCTAGCAGGCGCAGCCGCGCGCGGCGGTGATGGTGGCGGCGGAAGGGGTGGTGGGAGGCGGGTGTTTGGTGGGCGGGGTGGGTACGGGAGGGGCGGTGGTGGGAGAGGTGGGAGGTGGTCCAGTGGCAGCAATAGTGGTGGTCGTGGCAGTGGCGGAGTTGAGTGTTATAATTGTGGGGGCATTGGTCACTTAGCTAGGGATTGTGTTGGCGGTGGTGGTGGGAACAGGGGTTATAATGGTGATGGTGGTGGAGGGAGAGGATTTCGCGGCAGCCGTGGTGGTGGAGGAAGGGCATGTTACAATTGTGGTGAGGAAGGGCATTTTGCAAGAGATTGCCCAATTGACCAAAATTGA

Network for GWHGAAZE024020

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00313.23	CSD	8	72	2.10E-24
PF00098.24	zf-CCHC	126	140	4.60E-07
PF00098.24	zf-CCHC	169	185	7.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CSD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.758
	SRR3591706	second leaf	22.290
	SRR3591707	mature leaf	14.277
	SRR3591708	Shoot apex	11.755
	SRR3591709	Stem	6.900
	SRR3591710	White floral bud	1.186
	SRR3591711	White flower	1.213
	SRR3591712	Green floral bud	0.262
	SRR3591713	Yellow flower	0.151
SRP173429	SRR8316895	Juvenile bud stage	0.678
	SRR8316896	Juvenile bud stage	1.347
	SRR8316897	Juvenile bud stage	1.390
	SRR8316894	Third green stage	0.141
	SRR8316900	Third green stage	0.730
	SRR8316901	Third green stage	0.367
	SRR8316898	Complete white stage	0.056
	SRR8316899	Complete white stage	1.283
	SRR8316903	Complete white stage	0.996
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.756
	SRR8316905	Silver flowering stage	0.079
	SRR8316906	Gold flowering stage	0.292
	SRR8316907	Gold flowering stage	0.516
	SRR8316908	Gold flowering stage	0.199
SRP132670	SRR6706286	Control	1.187
	SRR6706287	Light intensity 50%	1.185
	SRR6706288	Light intensity 20%	1.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.438
	CNS0095593	Slightly white alabastrum(diploid) 2	1.812
	CNS0095594	Slightly white alabastrum(diploid) 3	1.346
	CNS0095595	Whole white alabastrum(diploid) 2	1.113
	CNS0095596	Whole white alabastrum(diploid) 3	1.408
	CNS0095597	Whole white alabastrum(diploid) 4	1.024
	CNS0095598	Silvery flower (diploied) 1	3.938
	CNS0095599	Silvery flower (diploied) 2	2.026
	CNS0095600	Silvery flower (diploied) 3	0.343
	CNS0095601	Golden flower (diploid) 1	1.496
	CNS0095602	Golden flower (diploid) 2	1.994
	CNS0095603	Golden flower (diploid) 3	1.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.610
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.731
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.561
	CNS0095610	Silvery flower (tetraploid) 1	0.057
	CNS0095611	Silvery flower (tetraploid) 2	0.727
	CNS0095612	Silvery flower (tetraploid) 3	0.112
	CNS0095613	Golden flower (tetraploid) 1	0.552
	CNS0095614	Golden flower (tetraploid) 2	0.172
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	1.699
	CRR073298	Stem 2	1.941
	CRR073299	Stem 3	4.005
	CRR073300	Leaf 1	1.180
	CRR073301	Leaf 2	0.488
	CRR073302	Leaf 3	0.876
	CRR073303	Juvenile bud 1	0.881
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.594
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.207
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	16.210
	CRR073316	Gold flowering 2	14.402
	CRR073317	Gold flowering 3	20.681
	CRR073318	Tawny withering 1	1.747
	CRR073319	Tawny withering 2	3.917
	CRR073320	Tawny withering 3	2.996