Gene detail

Detail information of GWHGAAZE024022

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018993.1	0	Flavonol synthase [Theobroma cacao]
COG	YP_628371.1	8E-27	2OG-Fe(II) oxygenase
Swissprot	tr\|Q07512\|FLS_PETHY	2E-179	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|A0A061FH54\|A0A061FH54_THECC	0	Flavonol synthase {ECO:0000313\|EMBL:EOY16218.1}
TAIR10	AT5G08640.2	2E-119	flavonol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33092352	33095020	-
GWHAAZE00000007	mRNA	33092352	33095020	-
GWHAAZE00000007	exon	33092352	33092564	-
GWHAAZE00000007	exon	33093352	33093679	-
GWHAAZE00000007	exon	33094554	33095020	-
GWHAAZE00000007	CDS	33094554	33095020	-
GWHAAZE00000007	CDS	33093352	33093679	-
GWHAAZE00000007	CDS	33092352	33092564	-

Transcript Sequence
>GWHTAAZE024054 ATGGAGGTAGAGAGAGTGCAACATGTTGCTAGCACTGCCCTAGCCCAAGACACCATACCGCCCGAATTCATCCGGTCTGAGCATGAGCAACCGGGGCTCACCACATTCCGAGGCAGTGCACCAGACGTGCCAGTCATCGACTTATCGACAAAGGACGAAAAAGAAGTCATAGACGCGATAGCGAACGCGGCTCAAAAATGGGGTTTATTTCAAGTTGTGAACCATGAGATACCAAATGATGTTATAGCAAAATTACAAGAGGTTGGGAGGCAATTCTTTGAGCTTCCACAAGAAGAGAAGGAATTGTATGCTAAGCAACCAGGGAAAAATAGTGTTGAAGGGTATGGTACAAAGCTTCAAAAGGAAATTGAAGGGAAGAAAGGTTGGGTTGATCATTTGTTTAATAGGATTGCACCTCCTTCTGCTATTGATTACAAGTTTTGGCCTAAGAATCCACCTAGTTACAGGGAGGCAAATGAGGAGTACGCAAAATACTTGCACAAAGTGGAGGACAAGTTGCTAAGATTGATGTCATTAGGGTTAGGGTTAGAAGGGCATGAGCTTAAGGAAGTAGTGGGTGGTGATAAATTGGAGTACATGATGAAGATAAATTATTACCCGCCATGCCCTCGCCCTGACCTAGCCCTCGGGGTGCCTGCACACACTGACATGTCTGCCCTTACCATTCTTGTCCCCAATGAAGTACAAGGCCTTCAAGTCTTCCATGATGAGCATTGGTATGATGTTAAGTACATACCTAATGCCCTCATCATCCATGTTGGTGATCAATCTGAGATTGTGAGTAATGGAAAGTACAAAAGCGTGTTACACAGAACAACAGTGAACAAAGATAAAGTAAGAATGTCATGGCCGGTGTTCATGGAACCACCGTTAGACCTCGAAGTGGGCCCACACCCCAAGCTTGTCAGTGAGGACAATCCTCCAAAGTACAAGACCAAGAAATTTCGTGACTACGTCTACTGCAAGTTCAACAAGATTCCACAATAA

Network for GWHGAAZE024022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	43	149	1.70E-24
PF03171.21	2OG-FeII_Oxy	199	296	4.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05278	FLS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.135
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.161
	SRR3591708	Shoot apex	0.546
	SRR3591709	Stem	1.678
	SRR3591710	White floral bud	245.681
	SRR3591711	White flower	3.430
	SRR3591712	Green floral bud	244.330
	SRR3591713	Yellow flower	0.188
SRP173429	SRR8316895	Juvenile bud stage	3.930
	SRR8316896	Juvenile bud stage	29.527
	SRR8316897	Juvenile bud stage	10.487
	SRR8316894	Third green stage	23.766
	SRR8316900	Third green stage	162.888
	SRR8316901	Third green stage	151.620
	SRR8316898	Complete white stage	0.124
	SRR8316899	Complete white stage	0.484
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.458
	SRR8316904	Silver flowering stage	1.968
	SRR8316905	Silver flowering stage	0.336
	SRR8316906	Gold flowering stage	0.324
	SRR8316907	Gold flowering stage	0.403
	SRR8316908	Gold flowering stage	0.200
SRP132670	SRR6706286	Control	114.227
	SRR6706287	Light intensity 50%	124.912
	SRR6706288	Light intensity 20%	120.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	81.894
	CNS0095593	Slightly white alabastrum(diploid) 2	73.345
	CNS0095594	Slightly white alabastrum(diploid) 3	90.302
	CNS0095595	Whole white alabastrum(diploid) 2	321.633
	CNS0095596	Whole white alabastrum(diploid) 3	349.041
	CNS0095597	Whole white alabastrum(diploid) 4	450.746
	CNS0095598	Silvery flower (diploied) 1	1.121
	CNS0095599	Silvery flower (diploied) 2	5.529
	CNS0095600	Silvery flower (diploied) 3	2.718
	CNS0095601	Golden flower (diploid) 1	2.789
	CNS0095602	Golden flower (diploid) 2	1.089
	CNS0095603	Golden flower (diploid) 3	1.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	85.601
	CNS0095605	Slightly white alabastrum(tetraploid) 2	96.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.198
	CNS0095607	Whole white alabastrum(tetraploid) 1	245.003
	CNS0095608	Whole white alabastrum(tetraploid) 2	330.025
	CNS0095609	Whole white alabastrum(tetraploid) 3	228.962
	CNS0095610	Silvery flower (tetraploid) 1	0.334
	CNS0095611	Silvery flower (tetraploid) 2	3.545
	CNS0095612	Silvery flower (tetraploid) 3	10.717
	CNS0095613	Golden flower (tetraploid) 1	0.879
	CNS0095614	Golden flower (tetraploid) 2	0.206
	CNS0095615	Golden flower (tetraploid) 3	7.048
CRA001975	CRR073297	Stem 1	17.682
	CRR073298	Stem 2	25.158
	CRR073299	Stem 3	19.969
	CRR073300	Leaf 1	138.740
	CRR073301	Leaf 2	90.158
	CRR073302	Leaf 3	52.688
	CRR073303	Juvenile bud 1	90.489
	CRR073304	Juvenile bud 2	69.090
	CRR073305	Juvenile bud 3	4.989
	CRR073306	Third green 1	42.271
	CRR073307	Third green 2	59.258
	CRR073308	Third green 3	41.507
	CRR073309	Second white 1	1.940
	CRR073310	Second white 2	3.888
	CRR073311	Second white 3	6.511
	CRR073312	Silver flowering 1	30.733
	CRR073313	Silver flowering 2	24.323
	CRR073314	Silver flowering 3	13.778
	CRR073315	Gold flowering 1	42.261
	CRR073316	Gold flowering 2	5.241
	CRR073317	Gold flowering 3	15.340
	CRR073318	Tawny withering 1	31.095
	CRR073319	Tawny withering 2	34.605
	CRR073320	Tawny withering 3	25.954