Gene detail

Detail information of GWHGAAZE024025

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	2.67635E-42	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FNI9\|FBD14_ARATH	0.000000002	Putative FBD-associated F-box protein At5g22720
trEMBL	tr\|B9RI98\|B9RI98_RICCO	1E-42	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G16930.1	0.000000006	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33281391	33283431	+
GWHAAZE00000007	mRNA	33281391	33283431	+
GWHAAZE00000007	exon	33281391	33281709	+
GWHAAZE00000007	exon	33281934	33282280	+
GWHAAZE00000007	exon	33282392	33282535	+
GWHAAZE00000007	exon	33283132	33283431	+
GWHAAZE00000007	CDS	33281391	33281709	+
GWHAAZE00000007	CDS	33281934	33282280	+
GWHAAZE00000007	CDS	33282392	33282535	+
GWHAAZE00000007	CDS	33283132	33283431	+

Transcript Sequence
>GWHTAAZE024057 TGCAGCACAAGCAGAAATATTCTTTTGGCAGATCGGATTAGCGGGTTGCCAGATGACATTCTTACAACTATTCTGTCGCACTTGACGATGAAAGAAGCAGCAAGTACCACCGTTCTCTCTCATAGATGGAACAACTTATGGATGCACACCACTGGTTGCTTGGACTTTGACGATTCAAGAACTTTAACCTTTTGGACTATTAAGCTTTATATATCGAGTCGTTTTAGGGAACCGGATCTTGTAGAAGAGGGGCCCTTGCTTGAAGAAGATAGGGTCCTGTTTGCTGGATGGGTAAATCGGATTTTGAAGTTGCATAAGGGCGTGACTCGGGAACTACTTGAGTACATTTTATCCAACTGCCCTGTTCTTGAATTTGTATGCGTTAGATGCCCCCGTAGTCTGGTTGGTGCCAAAGTTGATGCCGCCTCTCCAAAGCTCCATTATTTGGAGATATCCAGCCACCATGTGGAGTTTCTAGAGATTTCTTCTGCAATAAATCTTAGGACGTTGAAATACTTTGGACCTGAAGCAAGCCTTTGTTTCAAGAATGCTCCAAATCTTATTGATGTATCATTCGGGGGAGCCTACTGTAAAGACATTGCTCAGAAATTCCATGGGCATTCCTTCTCTCAGATAGAGAAACTTAAGTTGAACATGAGTTGTTATATTTTCGAGACCTATGACAGATTCCCCATATTAAAAAATCTCAAGCAATTGGAATTGGTAGTGAAGGGATGGGATCCACACGGTGTCCTTCACTATGCAACACTCCTTGAGAAATGCCCAATGTTGTGTAGACTTTGCGTGCAGTTCAATTGGTTCGAGGACCCGAAAGAAATAGAGATCCAGGAGAGAGAGTGTAGGCTCGAATGTCTCAAGTTTATTGAAATGTCGATATTTCGTGGGAGTAGAACTGATCTGGAACTGGCTACATTTCTGATTAAAAATTCTCCATGTCTCGAGAAGATTATTATTGATACTCGCGATCCTCCTAGTTACTCAGGAACCTTGTGGGAAGGACTCCAGAAAGATAGCGTGGCCGCCCAGGAGTCTGCAACACAGCTGCTGTCGACTAAACTATCTCCGGGTGTTGAATACCTTATACTTTGA

Network for GWHGAAZE024025

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	47	0.0004
PF08387.11	FBD	286	325	9.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.201
	SRR3591711	White flower	0.158
	SRR3591712	Green floral bud	0.033
	SRR3591713	Yellow flower	0.181
SRP173429	SRR8316895	Juvenile bud stage	0.331
	SRR8316896	Juvenile bud stage	0.639
	SRR8316897	Juvenile bud stage	0.305
	SRR8316894	Third green stage	0.102
	SRR8316900	Third green stage	0.415
	SRR8316901	Third green stage	0.458
	SRR8316898	Complete white stage	0.232
	SRR8316899	Complete white stage	0.056
	SRR8316903	Complete white stage	0.145
	SRR8316902	Silver flowering stage	0.138
	SRR8316904	Silver flowering stage	0.015
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.050
	SRR8316907	Gold flowering stage	0.211
	SRR8316908	Gold flowering stage	0.164
SRP132670	SRR6706286	Control	0.045
	SRR6706287	Light intensity 50%	0.137
	SRR6706288	Light intensity 20%	0.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.674
	CNS0095593	Slightly white alabastrum(diploid) 2	0.259
	CNS0095594	Slightly white alabastrum(diploid) 3	0.332
	CNS0095595	Whole white alabastrum(diploid) 2	0.226
	CNS0095596	Whole white alabastrum(diploid) 3	0.342
	CNS0095597	Whole white alabastrum(diploid) 4	0.124
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.032
	CNS0095600	Silvery flower (diploied) 3	0.141
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.512
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.002
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.790
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.284
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.487
	CNS0095613	Golden flower (tetraploid) 1	0.128
	CNS0095614	Golden flower (tetraploid) 2	0.006
	CNS0095615	Golden flower (tetraploid) 3	0.104
CRA001975	CRR073297	Stem 1	0.416
	CRR073298	Stem 2	0.069
	CRR073299	Stem 3	0.098
	CRR073300	Leaf 1	0.088
	CRR073301	Leaf 2	0.028
	CRR073302	Leaf 3	0.151
	CRR073303	Juvenile bud 1	0.114
	CRR073304	Juvenile bud 2	0.044
	CRR073305	Juvenile bud 3	0.104
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.176
	CRR073308	Third green 3	0.180
	CRR073309	Second white 1	0.047
	CRR073310	Second white 2	0.170
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.050
	CRR073313	Silver flowering 2	0.159
	CRR073314	Silver flowering 3	0.241
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.046
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.124