Gene detail

Detail information of GWHGAAZE024027

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	5.44003E-77	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	1E-19	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|B9RI98\|B9RI98_RICCO	2E-77	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G16930.1	9E-17	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33388865	33390906	+
GWHAAZE00000007	mRNA	33388865	33390906	+
GWHAAZE00000007	exon	33388865	33389755	+
GWHAAZE00000007	exon	33389864	33390007	+
GWHAAZE00000007	exon	33390607	33390906	+
GWHAAZE00000007	CDS	33388865	33389755	+
GWHAAZE00000007	CDS	33389864	33390007	+
GWHAAZE00000007	CDS	33390607	33390906	+

Transcript Sequence
>GWHTAAZE024059 TGCAGCACAAGCAGAAATATTCTTTTGGCAGATCGGATTAGCGGGTTGCCAGATGACATTCTTACGACTATTCTGTCGCACTTGACGATGAAAGAAGCAGCAAGTACCACCGTTCTCTCTCATAGATGGAACAACTTATGGATGCACACCACTGGTTGCTTGGACTTTGACGATTCAAGAACTTTAACCTTTTGGACTATTAAGCTTTATATATCGAGTCGTTTTAGGGAACCGGATCTTGTAGAAGAGGGGCCCTTGCTTGAAGAAGATAGGGTCCTGTTTGCTGGATGGGTAAATCGGATTTTGAAGTTGCATAAGGGTGCCACAATCGACGGATTTAGAGTCCATTTTGATTTGGATTCAAGTTCTAGATCTGATATTGATAGCTGGATTAACTTTGCGTTGCAAAAGAAAGCAAGGAGACTTGAACTGGACTTGGACCGATTGTTTAAACCTTGGGAGGGCATCTACCCTTTTCCAGAAAAATCTGTTATTGGCCATCCAACCATCAATTCCCTGACCTATCTCAAGTTGAACTATGTAGACGTGACTCGGGAACTACTTGAGTACATTTTATCCAACTGCCCTGTTCTTGAATTTGTATGCGTTAGATGCCCCCGTAGTCTGGTTGGTGCCAAAGTTGATGCCGCCTCTCCAAAGCTCCATTATTTGGAGATATCCTGCCACCATGTGGAGTTTCTAGAGATTTCTTCTGCAATAAATCTTAGGACGTTGAAATACTTTGGACCTGAAGCAAGCCTTTGTTTCAAGAATGCTCCAAATCTTATTGATGTATCATTCGGGGGAGCCTACTGTAAAGACATTGCTCAGAAATTCCATGGGCATTCCTTCTCTCAGATAGAGAAACTTAAGTTGAACATGAGTTGTTATATTTTCGAGACCTATGACAGATTCCCCATATTAAAAAATCTCAAGCAATTGGAATTGGTAGTGAAGGGATGGGATCCACACGGTGTCCTTCACTATGCAACACTCCTTGAGAAATGCCCAATGTTGTGTAGACTTTGCGTGCAGTTCAATTGGTTCGAGGACCCGAAAGAAATAGAGATCCAGGAGAGAGAGTGTAGGCTCGAATGTCTCAAGTTTATTGAAATGTCGATATTTCGTGGGAGTAGAACTGATCTGGAACTGGCTACATTTCTGATTAAAAATTCTCCATGTCTCGAGAAGATTATTATTGATACTCGCGATCCTCCTAGTTACTCAGGAACCTTGTGGGAAGGACTCCAGAAAGATAGCGTGGCCGCCCAGGAGTCTGCAACACAGCTGCTGTCGACTAAACTATCTCCGGGTGTTGAATACCTTATACTTTGA

Network for GWHGAAZE024027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	47	0.00051
PF08387.11	FBD	361	400	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.035
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.131
	SRR3591711	White flower	0.150
	SRR3591712	Green floral bud	0.204
	SRR3591713	Yellow flower	0.167
SRP173429	SRR8316895	Juvenile bud stage	0.852
	SRR8316896	Juvenile bud stage	1.199
	SRR8316897	Juvenile bud stage	0.402
	SRR8316894	Third green stage	0.258
	SRR8316900	Third green stage	0.543
	SRR8316901	Third green stage	0.635
	SRR8316898	Complete white stage	0.903
	SRR8316899	Complete white stage	0.010
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.206
	SRR8316904	Silver flowering stage	0.228
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.076
	SRR8316907	Gold flowering stage	0.281
	SRR8316908	Gold flowering stage	0.250
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.375
	SRR6706288	Light intensity 20%	0.157
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.670
	CNS0095593	Slightly white alabastrum(diploid) 2	0.431
	CNS0095594	Slightly white alabastrum(diploid) 3	0.747
	CNS0095595	Whole white alabastrum(diploid) 2	0.596
	CNS0095596	Whole white alabastrum(diploid) 3	1.158
	CNS0095597	Whole white alabastrum(diploid) 4	0.152
	CNS0095598	Silvery flower (diploied) 1	0.115
	CNS0095599	Silvery flower (diploied) 2	0.107
	CNS0095600	Silvery flower (diploied) 3	0.135
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.028
	CNS0095603	Golden flower (diploid) 3	0.106
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.062
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.371
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.984
	CNS0095610	Silvery flower (tetraploid) 1	0.085
	CNS0095611	Silvery flower (tetraploid) 2	0.159
	CNS0095612	Silvery flower (tetraploid) 3	0.807
	CNS0095613	Golden flower (tetraploid) 1	0.291
	CNS0095614	Golden flower (tetraploid) 2	0.094
	CNS0095615	Golden flower (tetraploid) 3	0.190
CRA001975	CRR073297	Stem 1	0.688
	CRR073298	Stem 2	0.238
	CRR073299	Stem 3	0.194
	CRR073300	Leaf 1	0.233
	CRR073301	Leaf 2	0.119
	CRR073302	Leaf 3	0.571
	CRR073303	Juvenile bud 1	0.180
	CRR073304	Juvenile bud 2	0.081
	CRR073305	Juvenile bud 3	0.247
	CRR073306	Third green 1	0.267
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.266
	CRR073309	Second white 1	0.683
	CRR073310	Second white 2	0.108
	CRR073311	Second white 3	0.130
	CRR073312	Silver flowering 1	0.369
	CRR073313	Silver flowering 2	0.204
	CRR073314	Silver flowering 3	0.218
	CRR073315	Gold flowering 1	0.153
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.062
	CRR073318	Tawny withering 1	0.090
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.496