Gene detail

Detail information of GWHGAAZE024030

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002864307.1	7.7516E-124	O-methyltransferase 1 [Arabidopsis lyrata subsp. lyrata]
COG	YP_001869557.1	3E-39	O-methyltransferase family protein
Swissprot	tr\|Q00763\|COMT1_POPTM	3E-123	Caffeic acid 3-O-methyltransferase 1
trEMBL	tr\|D7MTQ0\|D7MTQ0_ARALL	3E-124	O-methyltransferase 1 {ECO:0000313\|EMBL:EFH40566.1}
TAIR10	AT5G54160.1	1E-100	O-methyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33474478	33477551	-
GWHAAZE00000007	mRNA	33474478	33477551	-
GWHAAZE00000007	exon	33474478	33474771	-
GWHAAZE00000007	exon	33475652	33475716	-
GWHAAZE00000007	exon	33476444	33476751	-
GWHAAZE00000007	exon	33477166	33477551	-
GWHAAZE00000007	CDS	33477166	33477551	-
GWHAAZE00000007	CDS	33476444	33476751	-
GWHAAZE00000007	CDS	33475652	33475716	-
GWHAAZE00000007	CDS	33474478	33474771	-

Transcript Sequence
>GWHTAAZE024064 ATGACTTCTATAGAAATAAATCCTATAAATAAAGAAGAAGATGAAGCAATTGCTTGTGCCATGCAATTATCATCTAGTTTTGTTGTTCCCATGGTCCTGAACGTGGCTATTGAGCTCGGCTTGCTTAAAATTATAGCAAAAACTGGACAAATGTCGCCTTCAGAAATGGCTTCTCACCTCCCCACGAAGAATAAGGACGCTCCTGCCATGCTTGACAGCATTATGAGGTTGCTTGCCACTCACTCTGTTGTAACTTGTTCTTTAAGCAACCCCGAAGGTGGTGGGGAGGTTGAAAGGCTCTATGGGCTCACCCCCACCGGAGAATTGTTTGCTCAAAACCGTAGTAGTTTTCTATTCCCGTACGGTCGAAAGTACATTGACACCTGGTACCATTTGAAAGATGCAATTCTTGAAGGTGGTAATCCATTTGAAAGAGCCTATGGGATGCCTTTTTACAAACATATTGGTGCAAATTCCAATGAAAGCAATCACTTTCATAGGGCAATAAGCCAATCAGATGTAGTTATGACCAAAATCTTAAAGGCATACAAAGGTTTCGAGGGGATTAAGTCATTGGTTGACGTTGGAGGTGCAATTGGCACTACCCTCCACCTAATTACCTCCAAGTACCCTTCCATTAAAGGCATCAATTTTGATTTGCCTCATGTCATAGACAATGCCCCACTTCAAAATGGCATTGAGCATGTGGCAGGTGATATGTTTGTGAGCGTCCCCACGAGTGAAGCCATTCTTTTGAAGTGGGTATGCCATAATTGGGACGATGAACACTGCTTAAAACTTCTTAACAATTGCTATAAGGCTCTACCTACAAGTGGAAAGGTTATCCTTGTAGAGTATATAATGCCATTGGCACCAAACACCAGCATTGCCAATAAGTATATTACTCAACTTGATAACATTATGTTATCCAATTTTGGAGGAAAGGAGAGGACTATAAATGAATTTCAAGCCGTGTCCAAAGCTGCTGGTTTTTCAAAGATTCGACTTCATTCTTATGATTGCATCCCTTCTGTTGTGGAAATCTTCAAATAA

Network for GWHGAAZE024030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08100.12	Dimerisation	31	79	1.40E-16
PF00891.19	Methyltransf_2	129	332	1.40E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13066	E2.1.1.68, COMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0008171	molecular_function	O-methyltransferase activity
GO:0008168	molecular_function	methyltransferase activity
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.283
	SRR3591706	second leaf	61.788
	SRR3591707	mature leaf	52.779
	SRR3591708	Shoot apex	2.025
	SRR3591709	Stem	0.355
	SRR3591710	White floral bud	0.190
	SRR3591711	White flower	0.228
	SRR3591712	Green floral bud	0.240
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	0.042
	SRR8316896	Juvenile bud stage	0.078
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.026
	SRR8316900	Third green stage	0.206
	SRR8316901	Third green stage	0.140
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.075
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.035
	SRR8316904	Silver flowering stage	0.837
	SRR8316905	Silver flowering stage	0.064
	SRR8316906	Gold flowering stage	0.277
	SRR8316907	Gold flowering stage	0.201
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.049
	SRR6706287	Light intensity 50%	0.200
	SRR6706288	Light intensity 20%	0.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.109
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.030
	CNS0095596	Whole white alabastrum(diploid) 3	0.010
	CNS0095597	Whole white alabastrum(diploid) 4	0.066
	CNS0095598	Silvery flower (diploied) 1	0.162
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.269
	CNS0095601	Golden flower (diploid) 1	0.113
	CNS0095602	Golden flower (diploid) 2	0.184
	CNS0095603	Golden flower (diploid) 3	0.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.120
	CNS0095611	Silvery flower (tetraploid) 2	0.743
	CNS0095612	Silvery flower (tetraploid) 3	0.197
	CNS0095613	Golden flower (tetraploid) 1	0.047
	CNS0095614	Golden flower (tetraploid) 2	0.437
	CNS0095615	Golden flower (tetraploid) 3	0.161
CRA001975	CRR073297	Stem 1	0.056
	CRR073298	Stem 2	0.042
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.054
	CRR073302	Leaf 3	0.141
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.072
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.805
	CRR073309	Second white 1	0.075
	CRR073310	Second white 2	0.126
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	94.851
	CRR073316	Gold flowering 2	65.375
	CRR073317	Gold flowering 3	65.236
	CRR073318	Tawny withering 1	0.691
	CRR073319	Tawny withering 2	0.183
	CRR073320	Tawny withering 3	0.477