Gene detail

Detail information of GWHGAAZE024032

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010241050.1	5.3629E-115	PREDICTED: caffeic acid 3-O-methyltransferase 1 [Nelumbo nucifera]
COG	YP_007039608.1	1E-37	Methyltransferase
Swissprot	tr\|Q00763\|COMT1_POPTM	7E-115	Caffeic acid 3-O-methyltransferase 1
trEMBL	tr\|M0ZIL7\|M0ZIL7_SOLTU	9E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400001512}
TAIR10	AT5G54160.1	3E-90	O-methyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33532998	33536262	-
GWHAAZE00000007	mRNA	33532998	33536262	-
GWHAAZE00000007	exon	33535819	33536262	-
GWHAAZE00000007	exon	33535124	33535434	-
GWHAAZE00000007	exon	33534223	33534287	-
GWHAAZE00000007	exon	33532998	33533291	-
GWHAAZE00000007	five_prime_UTR	33536235	33536262	-
GWHAAZE00000007	CDS	33535819	33536234	-
GWHAAZE00000007	CDS	33535124	33535434	-
GWHAAZE00000007	CDS	33534223	33534287	-
GWHAAZE00000007	CDS	33532998	33533291	-

Transcript Sequence
>GWHTAAZE024066 ATTTTTTTCGTCTTATATTAAAATAAAGATGAGTCTTATGAAATCAAATCCCACATTAAAAGACGAAAACGATGCATTTGCTTGTGCCTTGCAAGTAACCTCCTCTTACATTGTTCCTATGGTCCTAAAGGCGGCTCTTGAGCTCGGCTTGTTTGATATTATAGCAAAAAAGGGACAAATCCCACCTTCAGAAATGGCTTCTCACCTACTTGCAAAGAATAAGGATGCACCCGCCATGCTTGACAGGATGCTGAGGTTGCTTGCTACTCACTCTATTCTAACTTGTTCTCTAAGCAATCTTGAAGAAGGTGGTGGTGGGGAGGTTGAGAGGCTCTATGGGCTCCCCCCGGCCGGAGAATTATTCGTGCAAGAAGTAGGTTGTTGCTCCCGTTTGTTGACCTCTTTTTTTCAATTCTCGAACACTGCAAATGGCATTGACTTCTGGCAACATATGAAAGATGCAATTCTTGATGGTGGTGTACCATTTCAAAGAGCCCGTGGGATGCCCTTTTACCAATATATTCGCGCAAGTCCCGATCGAAGCAAGAACTTTGATAGTTCAATGAGTGAACAAACCAACGCAATTATGACCAAAACCCTAAATAAATACAAAGGATTTGAGGGGATTAATTCACTGGTTGATGTTGGTGGTGGAATTGGCACAGCTCTCGAATTGATTACCTCCAAGTACCCTTCTATTAAGGGCATCAATTTTGATTTGCCTAGTGTCATAAAAAATGCACCCATTCAACATGGCATTCAGCTTGTTGCAGGTGATATGTTTGTGAGCATTCCCAAGAGTGAAGCCATTCTCTTAAAGTGGATATTGCACAATTGGGATGATGAACAGTGCTTGAAAATTCTTAAGAATTGCTATGAAGCTATACCTACAAGTGGGAAGGTTATTCTTGTAGAGTTTATAGTGCCGTTGGTACCAGACACCAGCATTTCCAGCAAGTTGATTTCTCAACTTGACAACATTATGTTATTCCTCCAAGAAGGAAAGGAGAGGACTATAAATGAATTTGAAGCCTTGTCCAAAGCTGCTGGTTTTTCGAAGATTCAACTTCACTCTTATGATTACATCACTTCTGTTGTGGAAATCTTCAAATAA

Network for GWHGAAZE024032

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08100.12	Dimerisation	31	79	5.30E-18
PF00891.19	Methyltransf_2	139	343	3.40E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13066	E2.1.1.68, COMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0008171	molecular_function	O-methyltransferase activity
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.285
	SRR3591706	second leaf	0.375
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.989
	SRR3591709	Stem	1.366
	SRR3591710	White floral bud	1.541
	SRR3591711	White flower	0.183
	SRR3591712	Green floral bud	1.550
	SRR3591713	Yellow flower	0.889
SRP173429	SRR8316895	Juvenile bud stage	4.394
	SRR8316896	Juvenile bud stage	3.917
	SRR8316897	Juvenile bud stage	0.717
	SRR8316894	Third green stage	3.080
	SRR8316900	Third green stage	10.662
	SRR8316901	Third green stage	11.395
	SRR8316898	Complete white stage	2.656
	SRR8316899	Complete white stage	18.298
	SRR8316903	Complete white stage	6.117
	SRR8316902	Silver flowering stage	3.893
	SRR8316904	Silver flowering stage	3.549
	SRR8316905	Silver flowering stage	1.023
	SRR8316906	Gold flowering stage	2.815
	SRR8316907	Gold flowering stage	3.264
	SRR8316908	Gold flowering stage	0.581
SRP132670	SRR6706286	Control	1.120
	SRR6706287	Light intensity 50%	1.291
	SRR6706288	Light intensity 20%	1.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.128
	CNS0095593	Slightly white alabastrum(diploid) 2	48.523
	CNS0095594	Slightly white alabastrum(diploid) 3	25.919
	CNS0095595	Whole white alabastrum(diploid) 2	44.916
	CNS0095596	Whole white alabastrum(diploid) 3	28.016
	CNS0095597	Whole white alabastrum(diploid) 4	26.943
	CNS0095598	Silvery flower (diploied) 1	11.874
	CNS0095599	Silvery flower (diploied) 2	32.064
	CNS0095600	Silvery flower (diploied) 3	17.937
	CNS0095601	Golden flower (diploid) 1	2.299
	CNS0095602	Golden flower (diploid) 2	3.033
	CNS0095603	Golden flower (diploid) 3	3.138
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.718
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.859
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.811
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.156
	CNS0095610	Silvery flower (tetraploid) 1	0.700
	CNS0095611	Silvery flower (tetraploid) 2	0.824
	CNS0095612	Silvery flower (tetraploid) 3	0.117
	CNS0095613	Golden flower (tetraploid) 1	0.345
	CNS0095614	Golden flower (tetraploid) 2	0.450
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	13.604
	CRR073298	Stem 2	10.963
	CRR073299	Stem 3	0.967
	CRR073300	Leaf 1	10.116
	CRR073301	Leaf 2	10.762
	CRR073302	Leaf 3	2.269
	CRR073303	Juvenile bud 1	5.410
	CRR073304	Juvenile bud 2	1.070
	CRR073305	Juvenile bud 3	6.509
	CRR073306	Third green 1	1.643
	CRR073307	Third green 2	1.715
	CRR073308	Third green 3	1.649
	CRR073309	Second white 1	0.672
	CRR073310	Second white 2	0.501
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.108
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000