Gene detail

Detail information of GWHGAAZE024035

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32776.1	0	hypothetical protein JCGZ_12068 [Jatropha curcas]
COG	YP_631933.1	4E-136	class I/II aminotransferase
Swissprot	tr\|Q5F4K8\|PAT_PINPS	1E-50	Aspartate aminotransferase (Precursor)
trEMBL	tr\|A0A067K986\|A0A067K986_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32776.1}
TAIR10	AT1G77670.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33637086	33638252	-
GWHAAZE00000007	mRNA	33637086	33638252	-
GWHAAZE00000007	exon	33637086	33638252	-
GWHAAZE00000007	CDS	33637086	33638252	-

Transcript Sequence
>GWHTAAZE024069 ATGGTATTTTTACAGGTTGCAAAGCGCTTGGAGAAGTTCAAAACTACAATCTTCATTCAAATAAATTCACTTGCCATCAGACACGGTGCAATAAATCTCAGCCAAGGCTTCCCCAATTTCGACGGTCCTGATTTCGTCAAAGAAGCTGCCATCCAAGCCATCAAAGACGGCAAGAATCAGTACGCCCGCGGGTACGGAGTCCCGGACCTCAACTCGGCCATAGCTGACCGGTTTAAGAAAGACACCGGTCTCGTGGTGGACCCTGAGAAGGAAGTTACTGTCACTTCCGGGGGCACCGAAGCAATCGCTGCCACCATGTTAGGGTTAATAAACCCCGGTGATGAGGTAATTCTCTTCGCTCCTTTTTACGATTCGTTTGAAGGTACTCTATATATGGCAGGCGCGAAGGTCAAGGGCATCACTTTACGCCCACCGGACTTTTCAGTCCCTATCGAAGAGCTTAAAGCTACTATTTCAAAAAATACACGCGCAATCCTTATAAATACGCCACACAACCCTACGGGAAAGATGTTCACTCGCGTTGAACTTAAAACTATCGCATCTCTATGTATTGAAAATGACGTTTTAGTTTTCACGGACGAAGTTTACGACAAATTAGCCTTTGAAATGGACCACATTTCAATGGCTTCCCTCCCGGGGATGTACGAACGGACCGTCACTTTGAATTCTATAGGAAAGACTTTTTCCCTAACGGGGTGGAAGATTGGGTGGGCAATAGCGCCCCCCCACCTGACATGGGGGGTTAGACAAGCCCACTCGTTCCTGACGTTTGCCACCTCGACGCCAATGCAGTATGCGGCCTCGGTTGCCCTCATGGCACCAGATTCCTACTACTTGGAACTAAAGAGGGACTACGCAAAGAAGAAGGCAATCTTGGTGGAGGGATTGAGGGCGGTGGGTTTCACGGTGTACCCTTCGAGTGGTAGCTATTATGTGGTCGTGGACCATACGGTGTTTGGGCAAAAGGATGACGTGGCATTTTGTGAGTATTTGATTAAGGAGGTTGGGGTCGCGGCAATCCCGACAAGTGTGTTTTACTTGAATCCGGAAGAAGGGAAGAATCTTGTGAGGTTTGCTTTCTGCAAAGATGAAGGGACTTTGAGGAGTGCCGTTGAGAGAATGAAAGAGAAGCTGTTGAAGAAGTGA

Network for GWHGAAZE024035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	31	380	4.40E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23977	GTK	Metabolic pathways	map01100
K23977	GTK	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.877
	SRR3591706	second leaf	20.329
	SRR3591707	mature leaf	18.647
	SRR3591708	Shoot apex	16.474
	SRR3591709	Stem	57.496
	SRR3591710	White floral bud	10.612
	SRR3591711	White flower	13.780
	SRR3591712	Green floral bud	16.551
	SRR3591713	Yellow flower	7.882
SRP173429	SRR8316895	Juvenile bud stage	9.982
	SRR8316896	Juvenile bud stage	16.000
	SRR8316897	Juvenile bud stage	4.934
	SRR8316894	Third green stage	8.401
	SRR8316900	Third green stage	27.346
	SRR8316901	Third green stage	24.048
	SRR8316898	Complete white stage	2.208
	SRR8316899	Complete white stage	25.720
	SRR8316903	Complete white stage	5.710
	SRR8316902	Silver flowering stage	2.913
	SRR8316904	Silver flowering stage	1.848
	SRR8316905	Silver flowering stage	0.931
	SRR8316906	Gold flowering stage	1.442
	SRR8316907	Gold flowering stage	3.641
	SRR8316908	Gold flowering stage	2.577
SRP132670	SRR6706286	Control	24.105
	SRR6706287	Light intensity 50%	18.237
	SRR6706288	Light intensity 20%	16.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.345
	CNS0095593	Slightly white alabastrum(diploid) 2	42.202
	CNS0095594	Slightly white alabastrum(diploid) 3	36.294
	CNS0095595	Whole white alabastrum(diploid) 2	41.820
	CNS0095596	Whole white alabastrum(diploid) 3	40.642
	CNS0095597	Whole white alabastrum(diploid) 4	46.989
	CNS0095598	Silvery flower (diploied) 1	8.115
	CNS0095599	Silvery flower (diploied) 2	8.408
	CNS0095600	Silvery flower (diploied) 3	6.002
	CNS0095601	Golden flower (diploid) 1	5.687
	CNS0095602	Golden flower (diploid) 2	4.446
	CNS0095603	Golden flower (diploid) 3	4.828
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.652
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.304
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.251
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.544
	CNS0095610	Silvery flower (tetraploid) 1	4.517
	CNS0095611	Silvery flower (tetraploid) 2	2.694
	CNS0095612	Silvery flower (tetraploid) 3	3.230
	CNS0095613	Golden flower (tetraploid) 1	4.054
	CNS0095614	Golden flower (tetraploid) 2	2.800
	CNS0095615	Golden flower (tetraploid) 3	4.082
CRA001975	CRR073297	Stem 1	10.885
	CRR073298	Stem 2	13.085
	CRR073299	Stem 3	14.524
	CRR073300	Leaf 1	21.795
	CRR073301	Leaf 2	24.903
	CRR073302	Leaf 3	27.278
	CRR073303	Juvenile bud 1	33.860
	CRR073304	Juvenile bud 2	13.786
	CRR073305	Juvenile bud 3	33.869
	CRR073306	Third green 1	5.857
	CRR073307	Third green 2	7.384
	CRR073308	Third green 3	9.419
	CRR073309	Second white 1	3.957
	CRR073310	Second white 2	3.077
	CRR073311	Second white 3	1.307
	CRR073312	Silver flowering 1	1.738
	CRR073313	Silver flowering 2	2.204
	CRR073314	Silver flowering 3	1.592
	CRR073315	Gold flowering 1	17.877
	CRR073316	Gold flowering 2	11.869
	CRR073317	Gold flowering 3	17.644
	CRR073318	Tawny withering 1	95.726
	CRR073319	Tawny withering 2	194.399
	CRR073320	Tawny withering 3	109.096