Gene detail

Detail information of GWHGAAZE024040

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011069557.1	4.2352E-82	PREDICTED: E3 ubiquitin-protein ligase RING1 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q8LPN7\|RNG1L_ARATH	4E-35	E3 ubiquitin-protein ligase RING1-like
trEMBL	tr\|A0A068V4W0\|A0A068V4W0_COFCA	3E-76	Coffea canephora DH200=94 genomic scaffold, scaffold_110 {ECO:0000313\|EMBL:CDP15805.1}
TAIR10	AT1G60360.1	8E-37	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	33721698	33722348	+
GWHAAZE00000007	mRNA	33721698	33722348	+
GWHAAZE00000007	exon	33721698	33722348	+
GWHAAZE00000007	CDS	33721698	33722348	+

Transcript Sequence
>GWHTAAZE024074 CGAGGTTGGTTATGGCCGTGGAGGAGAAATCGTGGGTTTGTTGAGAGTGACGATTTTGCCCCTGGAAGTGGGATTTTAGCCCGTCCGAGGCAATGGATTATAATCAGACCGGTTGGCCCCCAATTATTTGATGAAATTCCCCAGACAGAAGCTCTACTGCCAGGTAGGTTTGTTGATCCGCGGAATTACTTTGCTGGGCCGGGGCTAAATGAACTGATCGAACAACTTACTGAAAACGATAGGCCGGGGCCTCCCCCATTGCCTGATTCTGCAATTGAGGCTGTGCCGACTGTCAAAATTACACCTACCCATCTGAAGAATGATTCGACTTGCCCAGTTTGTAAGGAGGAATTTAAGGTTGGTGGAGAAGCTAGGGAGTTGCCTTGTAAGCATATATACCATTCTGATTGTATTGTGCCTTGGTTGAGGCTTCATAATTCTTGCCCGGTTTGTCGGCATGAGTTGCCAGTTCCTTGCGATGGAGGTGTTCTAGAAAATGACTCAGAGAATTCTCATGATGAGGAAAGTAGGAGGAGGAATCGGCGTTGCTTGTGGTTGAGACAGTTGGCCTCTTTATGGCCCTCTCGTTTGAGGCATCAACCACTTAATCCACACAGCCATGACACTTCTTCTTCTCGTGGTGAGAATTGA

Network for GWHGAAZE024040

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	110	152	2.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.160
	SRR3591706	second leaf	3.294
	SRR3591707	mature leaf	1.261
	SRR3591708	Shoot apex	3.123
	SRR3591709	Stem	8.805
	SRR3591710	White floral bud	2.440
	SRR3591711	White flower	1.737
	SRR3591712	Green floral bud	4.112
	SRR3591713	Yellow flower	1.816
SRP173429	SRR8316895	Juvenile bud stage	0.937
	SRR8316896	Juvenile bud stage	1.622
	SRR8316897	Juvenile bud stage	0.482
	SRR8316894	Third green stage	0.807
	SRR8316900	Third green stage	3.582
	SRR8316901	Third green stage	3.621
	SRR8316898	Complete white stage	0.368
	SRR8316899	Complete white stage	2.883
	SRR8316903	Complete white stage	1.444
	SRR8316902	Silver flowering stage	0.414
	SRR8316904	Silver flowering stage	0.678
	SRR8316905	Silver flowering stage	0.315
	SRR8316906	Gold flowering stage	0.879
	SRR8316907	Gold flowering stage	0.878
	SRR8316908	Gold flowering stage	0.931
SRP132670	SRR6706286	Control	1.501
	SRR6706287	Light intensity 50%	1.324
	SRR6706288	Light intensity 20%	1.629
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.962
	CNS0095593	Slightly white alabastrum(diploid) 2	4.433
	CNS0095594	Slightly white alabastrum(diploid) 3	2.928
	CNS0095595	Whole white alabastrum(diploid) 2	2.762
	CNS0095596	Whole white alabastrum(diploid) 3	1.339
	CNS0095597	Whole white alabastrum(diploid) 4	2.351
	CNS0095598	Silvery flower (diploied) 1	1.656
	CNS0095599	Silvery flower (diploied) 2	1.742
	CNS0095600	Silvery flower (diploied) 3	0.931
	CNS0095601	Golden flower (diploid) 1	1.197
	CNS0095602	Golden flower (diploid) 2	0.858
	CNS0095603	Golden flower (diploid) 3	0.648
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.917
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.784
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.698
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.403
	CNS0095610	Silvery flower (tetraploid) 1	1.036
	CNS0095611	Silvery flower (tetraploid) 2	1.130
	CNS0095612	Silvery flower (tetraploid) 3	3.914
	CNS0095613	Golden flower (tetraploid) 1	0.737
	CNS0095614	Golden flower (tetraploid) 2	1.657
	CNS0095615	Golden flower (tetraploid) 3	0.540
CRA001975	CRR073297	Stem 1	2.487
	CRR073298	Stem 2	1.827
	CRR073299	Stem 3	1.730
	CRR073300	Leaf 1	4.309
	CRR073301	Leaf 2	3.811
	CRR073302	Leaf 3	2.246
	CRR073303	Juvenile bud 1	3.532
	CRR073304	Juvenile bud 2	1.919
	CRR073305	Juvenile bud 3	4.233
	CRR073306	Third green 1	0.547
	CRR073307	Third green 2	0.955
	CRR073308	Third green 3	0.714
	CRR073309	Second white 1	1.245
	CRR073310	Second white 2	1.935
	CRR073311	Second white 3	0.302
	CRR073312	Silver flowering 1	0.614
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.045
	CRR073315	Gold flowering 1	1.065
	CRR073316	Gold flowering 2	0.644
	CRR073317	Gold flowering 3	1.108
	CRR073318	Tawny withering 1	8.941
	CRR073319	Tawny withering 2	7.687
	CRR073320	Tawny withering 3	7.760