Gene detail

Detail information of GWHGAAZE024059

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004290871.1	9.8507E-124	PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9XF91\|PSBS_ARATH	6E-119	Photosystem II 22 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|M5XWJ5\|M5XWJ5_PRUPE	1E-120	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23555.1}
TAIR10	AT1G44575.1	8E-75	Chlorophyll A-B binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34084237	34087034	-
GWHAAZE00000007	mRNA	34084237	34087034	-
GWHAAZE00000007	exon	34084237	34084484	-
GWHAAZE00000007	exon	34085214	34085457	-
GWHAAZE00000007	exon	34086197	34086310	-
GWHAAZE00000007	exon	34086822	34087034	-
GWHAAZE00000007	CDS	34086822	34087034	-
GWHAAZE00000007	CDS	34086197	34086310	-
GWHAAZE00000007	CDS	34085214	34085457	-
GWHAAZE00000007	CDS	34084237	34084484	-

Transcript Sequence
>GWHTAAZE024093 ATGGCTGCTCAAACAATGCTCCTAATGCCAAGTTCTGTATCTGGGCATACATTGAAGAGAACAGAGTCATTGGCTCAAACACTTGGTTCCAACAAGTCTTACTCAAAAAACCTCTTATTGCCTCCTTTTGCTACTTATTCTACCTCTTCTTCATATTCACCTATTGGAATTGTTGCTCTCTTCAAGTCTAAAACCAAAGCCCCTGTCAAGAAGGCAACACCACCAAAGCCAAAGGTTGAAGACGGGATATTTGGAACCTCAGGAGGCATTGGTTTTACAAAGGCAAATGAACTCTTTGTTGGTCGAGTTGCCATGATTGGCTTTGCTGCATCATTGTTGGGAGAAGCAATAACAGGAAAGGGAATTCTAGCACAATTGAACTTGGAAACTGGAATTCCAATTTATGAGGCAGAGCCATTGTTGTTGTTCTTCATCCTCTTCACTCTTCTCGGAGCCATCGGAGCTTTGGGAGACCGTGGTCAATTCGTCGACGACCCTCCCACTGGACTAGACCGAGCTGTCGTCCCCCCCGGCAAAGGTTTAAGATCCACTTTGGGTCTTAGCGAAGGAGGTCCACTATTTGGATTTACAAAATCAAACGAGCTGTTTGTTGGTAGGTTGGCTCAATTGGGAATTGCATTCTCCTTAATAGGAGAAATCATAACAGGAAAGGGAGCTCTGGCTCAACTCAACATTGAGACCGGCATTCCGATCAGCGACATCGAACCCCTTGTGTTGTTCAACGTTGCCTTCTTCTTCTTCGCCGCTTTGAATCCCGGTACTGGAAAATTCATCACCGATGAGGAAGCTGAAGATTAA

Network for GWHGAAZE024059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	89	216	6.10E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03542	psbS	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	337.121
	SRR3591706	second leaf	1655.838
	SRR3591707	mature leaf	1247.933
	SRR3591708	Shoot apex	597.391
	SRR3591709	Stem	169.017
	SRR3591710	White floral bud	14.581
	SRR3591711	White flower	28.037
	SRR3591712	Green floral bud	21.051
	SRR3591713	Yellow flower	3.975
SRP173429	SRR8316895	Juvenile bud stage	110.128
	SRR8316896	Juvenile bud stage	100.804
	SRR8316897	Juvenile bud stage	60.861
	SRR8316894	Third green stage	40.882
	SRR8316900	Third green stage	106.752
	SRR8316901	Third green stage	92.724
	SRR8316898	Complete white stage	27.482
	SRR8316899	Complete white stage	68.031
	SRR8316903	Complete white stage	41.615
	SRR8316902	Silver flowering stage	18.499
	SRR8316904	Silver flowering stage	13.371
	SRR8316905	Silver flowering stage	6.106
	SRR8316906	Gold flowering stage	23.667
	SRR8316907	Gold flowering stage	16.024
	SRR8316908	Gold flowering stage	16.797
SRP132670	SRR6706286	Control	98.385
	SRR6706287	Light intensity 50%	79.551
	SRR6706288	Light intensity 20%	86.369
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.837
	CNS0095593	Slightly white alabastrum(diploid) 2	78.869
	CNS0095594	Slightly white alabastrum(diploid) 3	73.662
	CNS0095595	Whole white alabastrum(diploid) 2	78.843
	CNS0095596	Whole white alabastrum(diploid) 3	57.276
	CNS0095597	Whole white alabastrum(diploid) 4	63.062
	CNS0095598	Silvery flower (diploied) 1	154.070
	CNS0095599	Silvery flower (diploied) 2	149.656
	CNS0095600	Silvery flower (diploied) 3	51.500
	CNS0095601	Golden flower (diploid) 1	144.943
	CNS0095602	Golden flower (diploid) 2	80.076
	CNS0095603	Golden flower (diploid) 3	74.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	72.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	123.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.714
	CNS0095610	Silvery flower (tetraploid) 1	28.785
	CNS0095611	Silvery flower (tetraploid) 2	45.020
	CNS0095612	Silvery flower (tetraploid) 3	34.178
	CNS0095613	Golden flower (tetraploid) 1	6.769
	CNS0095614	Golden flower (tetraploid) 2	21.242
	CNS0095615	Golden flower (tetraploid) 3	2.891
CRA001975	CRR073297	Stem 1	174.169
	CRR073298	Stem 2	130.385
	CRR073299	Stem 3	216.896
	CRR073300	Leaf 1	68.845
	CRR073301	Leaf 2	103.045
	CRR073302	Leaf 3	77.251
	CRR073303	Juvenile bud 1	110.713
	CRR073304	Juvenile bud 2	73.742
	CRR073305	Juvenile bud 3	96.797
	CRR073306	Third green 1	29.665
	CRR073307	Third green 2	13.318
	CRR073308	Third green 3	17.616
	CRR073309	Second white 1	28.260
	CRR073310	Second white 2	23.481
	CRR073311	Second white 3	12.938
	CRR073312	Silver flowering 1	8.319
	CRR073313	Silver flowering 2	15.910
	CRR073314	Silver flowering 3	13.001
	CRR073315	Gold flowering 1	1667.081
	CRR073316	Gold flowering 2	1645.848
	CRR073317	Gold flowering 3	1413.938
	CRR073318	Tawny withering 1	134.022
	CRR073319	Tawny withering 2	215.254
	CRR073320	Tawny withering 3	109.847