Gene detail

Detail information of GWHGAAZE024081

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAM34773.1AF509873_1	2.7587E-160	nam-like protein 10 [Petunia x hybrida]
Swissprot	tr\|Q39013\|NAC2_ARATH	3E-134	NAC domain-containing protein 2
trEMBL	tr\|Q8LRL5\|Q8LRL5_PETHY	1E-160	Nam-like protein 10 {ECO:0000313\|EMBL:AAM34773.1}
TAIR10	AT1G01720.1	1E-107	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34444073	34445852	-
GWHAAZE00000007	mRNA	34444073	34445852	-
GWHAAZE00000007	exon	34444073	34444498	-
GWHAAZE00000007	exon	34445144	34445421	-
GWHAAZE00000007	exon	34445693	34445852	-
GWHAAZE00000007	CDS	34445693	34445852	-
GWHAAZE00000007	CDS	34445144	34445421	-
GWHAAZE00000007	CDS	34444073	34444498	-

Transcript Sequence
>GWHTAAZE024115 ATGGCGGTCCAATTGGAATTACCCCCTGGTTTCAGATTCCATCCAACGGACGAAGAGCTGGTGATGCACTACCTGTGCCGCAAATGCGCGTCACAGCCGATTTCTGTTCCGATTATTGCTGAAATTGATCTTTACAAATTTAACCCCTGGGACCTTCCTGATTTGGCTTTGTACGGCGAAAAGGAATGGTATTTCTTTTCACCAAGGGACCGCAAGTATCCTAACGGCTCCAGGCCGAACCGGGCCGCTCAAGCTGGGTATTGGAAGGCTACCGGAGCCGATAAGCCCATCGGACGGCCAAAAGCCGTGGGAATTAAGAAAGCTCTAGTGTTTTACGCCGGAAAAGCACCACGCGGAGAGAAGACTAATTGGATCATGCATGAATATAGGCTGGCTGATGTAGACCGGTCAGCCCGCAAGAAGAACAGCAGCTTAAGGTTGGATGATTGGGTATTATGCCGCATCTACAACAAGAAAGGAACTGTCGAGAAGCCACAGGTCAGCAGCCAAGAACTAAACAACTCCTCGTTTTCCGACGAAAAGAAGCCGGAGATTCTTCCTCCCGTGCCGGAAAATTCACCGGCGGTTTTCGAGGATTTAGTGAACCTCAACGCATCAGATTCATTCCCTAGGATGCACACGGACTCGAGCTGCTCGGATCACGTGCACTCGCCGGAGATCACGTGCGAGAGGGAGGTACAAAGCGAACCAAAGCTAGACGAGTGGGAAAAAAATGCTCTCGATTATCCGTTTAATTACATGGATGCCACTGTGGAGAATAATCTGTTCGGTCCGCAGTTTCAGGGTAATTATCAGGTGTCGCCGCTGCAAGATATGTTCATGTACCTACAGAAGCCATTCTGA

Network for GWHGAAZE024081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	8	131	2.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.283
	SRR3591706	second leaf	13.834
	SRR3591707	mature leaf	6.255
	SRR3591708	Shoot apex	28.542
	SRR3591709	Stem	45.962
	SRR3591710	White floral bud	48.944
	SRR3591711	White flower	41.019
	SRR3591712	Green floral bud	34.637
	SRR3591713	Yellow flower	23.466
SRP173429	SRR8316895	Juvenile bud stage	11.791
	SRR8316896	Juvenile bud stage	15.666
	SRR8316897	Juvenile bud stage	24.990
	SRR8316894	Third green stage	1.908
	SRR8316900	Third green stage	9.963
	SRR8316901	Third green stage	19.782
	SRR8316898	Complete white stage	13.743
	SRR8316899	Complete white stage	29.269
	SRR8316903	Complete white stage	20.048
	SRR8316902	Silver flowering stage	21.738
	SRR8316904	Silver flowering stage	18.385
	SRR8316905	Silver flowering stage	12.021
	SRR8316906	Gold flowering stage	24.882
	SRR8316907	Gold flowering stage	20.669
	SRR8316908	Gold flowering stage	30.995
SRP132670	SRR6706286	Control	13.161
	SRR6706287	Light intensity 50%	21.342
	SRR6706288	Light intensity 20%	19.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.115
	CNS0095593	Slightly white alabastrum(diploid) 2	43.064
	CNS0095594	Slightly white alabastrum(diploid) 3	53.552
	CNS0095595	Whole white alabastrum(diploid) 2	48.316
	CNS0095596	Whole white alabastrum(diploid) 3	9.185
	CNS0095597	Whole white alabastrum(diploid) 4	18.962
	CNS0095598	Silvery flower (diploied) 1	22.014
	CNS0095599	Silvery flower (diploied) 2	48.967
	CNS0095600	Silvery flower (diploied) 3	35.622
	CNS0095601	Golden flower (diploid) 1	50.801
	CNS0095602	Golden flower (diploid) 2	41.859
	CNS0095603	Golden flower (diploid) 3	42.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.601
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.618
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.850
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.801
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.236
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.286
	CNS0095610	Silvery flower (tetraploid) 1	19.269
	CNS0095611	Silvery flower (tetraploid) 2	10.552
	CNS0095612	Silvery flower (tetraploid) 3	25.868
	CNS0095613	Golden flower (tetraploid) 1	9.746
	CNS0095614	Golden flower (tetraploid) 2	26.693
	CNS0095615	Golden flower (tetraploid) 3	20.372
CRA001975	CRR073297	Stem 1	26.375
	CRR073298	Stem 2	27.983
	CRR073299	Stem 3	26.309
	CRR073300	Leaf 1	47.494
	CRR073301	Leaf 2	41.676
	CRR073302	Leaf 3	36.508
	CRR073303	Juvenile bud 1	30.457
	CRR073304	Juvenile bud 2	115.412
	CRR073305	Juvenile bud 3	36.603
	CRR073306	Third green 1	163.439
	CRR073307	Third green 2	141.520
	CRR073308	Third green 3	112.053
	CRR073309	Second white 1	34.150
	CRR073310	Second white 2	48.921
	CRR073311	Second white 3	19.640
	CRR073312	Silver flowering 1	44.516
	CRR073313	Silver flowering 2	55.864
	CRR073314	Silver flowering 3	28.159
	CRR073315	Gold flowering 1	22.649
	CRR073316	Gold flowering 2	57.668
	CRR073317	Gold flowering 3	39.574
	CRR073318	Tawny withering 1	56.102
	CRR073319	Tawny withering 2	223.054
	CRR073320	Tawny withering 3	55.171