Detail information of GWHGAAZE024096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664174.10PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Vitis vinifera]
COGYP_007127003.18E-149protein translocase subunit secA
Swissprottr|D8WUA4|SECA2_ARATH0Protein translocase subunit SECA2, chloroplastic (Precursor)
trEMBLtr|F6H0I5|F6H0I5_VITVI0Protein translocase subunit SecA {ECO:0000256|RuleBase:RU003874}
TAIR10AT1G21650.10Preprotein translocase SecA family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3476854734777221-
GWHAAZE00000007mRNA3476854734777221-
GWHAAZE00000007exon3476854734768594-
GWHAAZE00000007exon3476872734768805-
GWHAAZE00000007exon3476952634769611-
GWHAAZE00000007exon3476971534769810-
GWHAAZE00000007exon3477026434770336-
GWHAAZE00000007exon3477437234774487-
GWHAAZE00000007exon3477459034774655-
GWHAAZE00000007exon3477477434774861-
GWHAAZE00000007exon3477494434775008-
GWHAAZE00000007exon3477512434775189-
GWHAAZE00000007exon3477540934775500-
GWHAAZE00000007exon3477581734775937-
GWHAAZE00000007exon3477605434776112-
GWHAAZE00000007exon3477621734776286-
GWHAAZE00000007exon3477677334776907-
GWHAAZE00000007exon3477702734777221-
GWHAAZE00000007CDS3477702734777221-
GWHAAZE00000007CDS3477677334776907-
GWHAAZE00000007CDS3477621734776286-
GWHAAZE00000007CDS3477605434776112-
GWHAAZE00000007CDS3477581734775937-
GWHAAZE00000007CDS3477540934775500-
GWHAAZE00000007CDS3477512434775189-
GWHAAZE00000007CDS3477494434775008-
GWHAAZE00000007CDS3477477434774861-
GWHAAZE00000007CDS3477459034774655-
GWHAAZE00000007CDS3477437234774487-
GWHAAZE00000007CDS3477026434770336-
GWHAAZE00000007CDS3476971534769810-
GWHAAZE00000007CDS3476952634769611-
GWHAAZE00000007CDS3476872734768805-
GWHAAZE00000007CDS3476854734768594-
Transcript Sequence

Network for GWHGAAZE024096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07517.15SecA_DEAD863845.20E-95
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03070secA Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0017038biological_processprotein import
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.984
SRR3591706second leaf1.112
SRR3591707mature leaf2.451
SRR3591708Shoot apex3.491
SRR3591709Stem1.593
SRR3591710White floral bud1.483
SRR3591711White flower3.555
SRR3591712Green floral bud1.593
SRR3591713Yellow flower1.626
SRP173429 SRR8316895Juvenile bud stage 2.047
SRR8316896Juvenile bud stage 2.743
SRR8316897Juvenile bud stage 1.601
SRR8316894Third green stage 1.156
SRR8316900Third green stage 2.624
SRR8316901Third green stage 1.652
SRR8316898Complete white stage 0.362
SRR8316899Complete white stage 0.943
SRR8316903Complete white stage 0.318
SRR8316902Silver flowering stage0.580
SRR8316904Silver flowering stage0.998
SRR8316905Silver flowering stage0.633
SRR8316906Gold flowering stage 1.663
SRR8316907Gold flowering stage 1.063
SRR8316908Gold flowering stage 1.899
SRP132670SRR6706286Control3.510
SRR6706287Light intensity 50%3.549
SRR6706288Light intensity 20%3.562
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.576
CNS0095593Slightly white alabastrum(diploid) 20.757
CNS0095594Slightly white alabastrum(diploid) 30.820
CNS0095595Whole white alabastrum(diploid) 20.784
CNS0095596Whole white alabastrum(diploid) 30.479
CNS0095597Whole white alabastrum(diploid) 40.849
CNS0095598Silvery flower (diploied) 11.857
CNS0095599Silvery flower (diploied) 21.523
CNS0095600Silvery flower (diploied) 31.214
CNS0095601Golden flower (diploid) 10.672
CNS0095602Golden flower (diploid) 21.184
CNS0095603Golden flower (diploid) 31.394
CNS0095604Slightly white alabastrum(tetraploid) 11.143
CNS0095605Slightly white alabastrum(tetraploid) 20.850
CNS0095606Slightly white alabastrum(tetraploid) 33.300
CNS0095607Whole white alabastrum(tetraploid) 10.356
CNS0095608Whole white alabastrum(tetraploid) 20.737
CNS0095609Whole white alabastrum(tetraploid) 32.569
CNS0095610Silvery flower (tetraploid) 12.930
CNS0095611Silvery flower (tetraploid) 22.557
CNS0095612Silvery flower (tetraploid) 31.786
CNS0095613Golden flower (tetraploid) 10.936
CNS0095614Golden flower (tetraploid) 22.141
CNS0095615Golden flower (tetraploid) 31.305
CRA001975CRR073297Stem 13.449
CRR073298Stem 23.485
CRR073299Stem 32.840
CRR073300Leaf 13.055
CRR073301Leaf 22.598
CRR073302Leaf 31.289
CRR073303Juvenile bud 11.642
CRR073304Juvenile bud 21.600
CRR073305Juvenile bud 31.765
CRR073306Third green 10.325
CRR073307Third green 20.407
CRR073308Third green 30.442
CRR073309Second white 10.480
CRR073310Second white 21.455
CRR073311Second white 30.663
CRR073312Silver flowering 11.324
CRR073313Silver flowering 21.375
CRR073314Silver flowering 30.428
CRR073315Gold flowering 11.794
CRR073316Gold flowering 24.008
CRR073317Gold flowering 31.940
CRR073318Tawny withering 11.242
CRR073319Tawny withering 21.880
CRR073320Tawny withering 31.355