Gene detail

Detail information of GWHGAAZE024097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664176.1	0	PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X2 [Vitis vinifera]
COG	YP_007146025.1	2E-16	WD40 repeat-containing protein
Swissprot	tr\|Q8L828\|COB23_ARATH	4E-10	Coatomer subunit beta'-3
trEMBL	tr\|F6H0I6\|F6H0I6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45458.1}
TAIR10	AT1G21650.3	8E-153	Preprotein translocase SecA family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34781562	34786920	-
GWHAAZE00000007	mRNA	34781562	34786920	-
GWHAAZE00000007	exon	34781562	34781813	-
GWHAAZE00000007	exon	34782469	34782741	-
GWHAAZE00000007	exon	34784143	34784198	-
GWHAAZE00000007	exon	34785201	34786920	-
GWHAAZE00000007	CDS	34785201	34786920	-
GWHAAZE00000007	CDS	34784143	34784198	-
GWHAAZE00000007	CDS	34782469	34782741	-
GWHAAZE00000007	CDS	34781562	34781813	-

Transcript Sequence
>GWHTAAZE024131 ATGATCTGTCAACGCACGCTCGAAATGGAGACCATGCTCCCACCGGCACCGGAGCTGGACTTGCCGGAGTGCCCGGTTTGCCTCCAATCCTACGACGGCGACACCACAACTCCCCGTGTTCTCGCCTGCGGCCACTCGGCATGCGAGACCTGCCTCAAAGACCTCCCAAAACCCTACCCCCACACCCTTCGTTGCCCGGCCTGTACTCAGCTTGTCAATTTCCCACACCCACAAGGCCCTTCTGCTCTCCCAAAGAACATCGACCTCCTCCGCCTCATCCAGCAAAACCCTAATCCCGCAAAACCCACTAAGCCCAATAACCAGTTTGTGCCCAATTTACCCAGTTCATGGACTGTTGAGTTTAGGTATAAATGGAAACAGTGGATTCTTCCCGAGGATGCCGTGGTGGTTGAATCGAGTGATGGTGGGTTTCTTGACGTGTTCTGTGGAAGGGTTGGGGAATTTGAGTGTTCTTTGGGGATGCCTATAAGGTGTTTGATGAAATGTCATCAAAAGGTGAGTCTTGTTAAAATTGGTTTGTTTCGGCAAGAAAATGATTCTAGGTTTAGGTTTAGTTATATTAACAAGATTGTGCAAGTTTTGTGTGGGATGAAAGATGGGGAGAGGAGTGAATTGGGTTTGATTTTGGGGGAAAGTTTGAAGATGGGGAGAACTTGTAAGATGTATGGGTTGTGGTATAATAAGGATGATGAGGGTGTGTATATGGTGTGTGGGAGGCATAGTTGGAGCTTTTTGAAGAAGTTGGAAGATTTGGAAAGTGGGTTTTTGTGTAGAGATGAGGAGAAAATGCATATGGGTATTAAAGATATGTCTTCTTTTGCAATGATTGGGGGGGAGATGTGTGAAACAGTGAGGAGTTTGCTTTCAGATGGATTTATGACTGGTTGTTTAGCTCCATCCTGGTTCGATATTGATGATTTTGGTCATGTTTACATTGATTTCAATGAGGTCTTGGTAACAGGTAGGAGAGTACGTAGAATAATTTCAGAGGCTCTTTCAGTTAAGCAAAAAACTAATGGTATGGAAATGAGCTTGAAAGATAATTTATTGAAACCCTATGTATTTGTCAGCCCAGAGCTATTGTTTGAGTTATTATGGAAAGAGGGCATTGACTTGGTATCTAGCAGCTTAAAATATGCAGTTGGTTATGGTTCAGATGTTTGGTCTTTATGTTGTGTTCTTCTTTGGCTTCTTCTTGGAAAACCTTTTATTGAAGAGTTGGAAAATTATTTATGTTGCTTTATCCCTTCAACAAGTGATGAAAATGGTCCCGATTTTATGGGGTTGTACATGAGTTGGTTGGAGAAAGTTAAAACTTTAATGGAAATGAGATTAGATTCAGAATTCGTATCACTCAAGGAGTATCTATACAATGGTTTGGATTTTGATCCAGCAAGGAGACCACTTGTAGCAGACATATGGAAGAGTATTAGGGAGTTAATTATTAAACCAAATTTAGATTTGATGGTCAATTTGGAGCACAAAATAACAATGGAGAACACAGGTCACTGCTTGGTTCTAGGAGAACTGTGTCAGCCACTAAAGGGCATTGAGAAAGATGGTGATGGTAGAGCAGATGTTGATCAAGTTGCTGAATTGAGGATTGAAAGAGATTTTGTTGAGGGCATTTCTGTGGGTCATTTCAAATGCATTGATCTAAAGGGTCATCATGATTGTATCACTGGATTAGCTGTTGGAGGGGGTTTCCTGTTCAGCTCCTCATTCGATAAAACAGTCTCCATATGGTCTCTGGAGGATTTGACTCATCTGCATTCATTCAAGGGCCATGAGCATAGAGTAATGGCTTTAGTTTTTGTGGATGAAGAACAACCCCTATGCATAAGCGGTGATAATGGAGGTGGCATTTGCATATGGGGCATTGGTATTCCATTTGCTGAAGAACCAATAAAAAAGTTGTACGAGGAAAAAGATTGGCGCTATAGTGGTATTCATGCTCTTGCTGTTTCTGGAACCGGATATCTTTATACTGGCAGTGGAGATAAGTCAATAAAAGCATGGTCAATGCTGGATTATACTCAGTCATGTACTATGAATGGACATAAATCAGTAGTTTCGACATTAGCAGTTTGTAATGGGGTTCTTTATAGTGGAAGTTGGGATGGAACTGTCCGGTTATGGTGCCTTAGCGATCATAGCCCTTTGACTGTACTAGGGGAAGATACACTTGGAAATGTTGCCTCTGTATTATCTATCGCTGCTGATGGAAATATGCTTATTGTGGCTCACGAGAACGGGAGCATAAAGGTTACTTTTATTTGA

Network for GWHGAAZE024097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0228

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13445.7	zf-RING_UBOX	24	66	4.40E-07
PF00400.33	WD40	560	590	0.06
PF00400.33	WD40	690	720	0.0038

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.631
	SRR3591706	second leaf	0.502
	SRR3591707	mature leaf	1.003
	SRR3591708	Shoot apex	1.010
	SRR3591709	Stem	1.676
	SRR3591710	White floral bud	1.651
	SRR3591711	White flower	1.422
	SRR3591712	Green floral bud	1.057
	SRR3591713	Yellow flower	1.736
SRP173429	SRR8316895	Juvenile bud stage	2.120
	SRR8316896	Juvenile bud stage	2.626
	SRR8316897	Juvenile bud stage	2.300
	SRR8316894	Third green stage	1.557
	SRR8316900	Third green stage	3.930
	SRR8316901	Third green stage	2.967
	SRR8316898	Complete white stage	1.260
	SRR8316899	Complete white stage	4.534
	SRR8316903	Complete white stage	2.733
	SRR8316902	Silver flowering stage	1.274
	SRR8316904	Silver flowering stage	2.954
	SRR8316905	Silver flowering stage	1.174
	SRR8316906	Gold flowering stage	4.823
	SRR8316907	Gold flowering stage	4.185
	SRR8316908	Gold flowering stage	6.893
SRP132670	SRR6706286	Control	1.748
	SRR6706287	Light intensity 50%	1.847
	SRR6706288	Light intensity 20%	1.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.254
	CNS0095593	Slightly white alabastrum(diploid) 2	1.188
	CNS0095594	Slightly white alabastrum(diploid) 3	1.589
	CNS0095595	Whole white alabastrum(diploid) 2	1.228
	CNS0095596	Whole white alabastrum(diploid) 3	1.216
	CNS0095597	Whole white alabastrum(diploid) 4	1.679
	CNS0095598	Silvery flower (diploied) 1	2.478
	CNS0095599	Silvery flower (diploied) 2	2.054
	CNS0095600	Silvery flower (diploied) 3	4.363
	CNS0095601	Golden flower (diploid) 1	2.035
	CNS0095602	Golden flower (diploid) 2	4.906
	CNS0095603	Golden flower (diploid) 3	3.566
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.855
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.662
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.232
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.690
	CNS0095610	Silvery flower (tetraploid) 1	7.746
	CNS0095611	Silvery flower (tetraploid) 2	8.794
	CNS0095612	Silvery flower (tetraploid) 3	7.379
	CNS0095613	Golden flower (tetraploid) 1	3.388
	CNS0095614	Golden flower (tetraploid) 2	5.738
	CNS0095615	Golden flower (tetraploid) 3	4.961
CRA001975	CRR073297	Stem 1	2.173
	CRR073298	Stem 2	2.062
	CRR073299	Stem 3	1.216
	CRR073300	Leaf 1	2.747
	CRR073301	Leaf 2	1.604
	CRR073302	Leaf 3	1.128
	CRR073303	Juvenile bud 1	1.176
	CRR073304	Juvenile bud 2	1.102
	CRR073305	Juvenile bud 3	1.332
	CRR073306	Third green 1	0.374
	CRR073307	Third green 2	0.263
	CRR073308	Third green 3	0.902
	CRR073309	Second white 1	0.582
	CRR073310	Second white 2	0.474
	CRR073311	Second white 3	1.522
	CRR073312	Silver flowering 1	0.382
	CRR073313	Silver flowering 2	0.443
	CRR073314	Silver flowering 3	0.583
	CRR073315	Gold flowering 1	0.729
	CRR073316	Gold flowering 2	2.819
	CRR073317	Gold flowering 3	0.569
	CRR073318	Tawny withering 1	1.440
	CRR073319	Tawny withering 2	1.018
	CRR073320	Tawny withering 3	0.633