Detail information of GWHGAAZE024104


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664176.10PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X2 [Vitis vinifera]
COGYP_007127003.10protein translocase subunit secA
Swissprottr|D8WUA4|SECA2_ARATH0Protein translocase subunit SECA2, chloroplastic (Precursor)
trEMBLtr|V4KTM1|V4KTM1_EUTSA0Protein translocase subunit SecA {ECO:0000256|RuleBase:RU003874}
TAIR10AT1G21650.30Preprotein translocase SecA family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3491220334938762-
GWHAAZE00000007mRNA3491220334938762-
GWHAAZE00000007exon3493706434938762-
GWHAAZE00000007exon3493600534936060-
GWHAAZE00000007exon3493433334934578-
GWHAAZE00000007exon3493342934933665-
GWHAAZE00000007exon3493200134932120-
GWHAAZE00000007exon3493116834931299-
GWHAAZE00000007exon3492865534928789-
GWHAAZE00000007exon3492810034928169-
GWHAAZE00000007exon3492793734927995-
GWHAAZE00000007exon3492769434927814-
GWHAAZE00000007exon3492728934927380-
GWHAAZE00000007exon3492704434927069-
GWHAAZE00000007exon3492665934926746-
GWHAAZE00000007exon3492647534926540-
GWHAAZE00000007exon3492625934926374-
GWHAAZE00000007exon3492584934925956-
GWHAAZE00000007exon3492215334922225-
GWHAAZE00000007exon3492195634922048-
GWHAAZE00000007exon3492159734921692-
GWHAAZE00000007exon3492140834921493-
GWHAAZE00000007exon3492061234920690-
GWHAAZE00000007exon3492036634920479-
GWHAAZE00000007exon3492008434920179-
GWHAAZE00000007exon3491994234920005-
GWHAAZE00000007exon3491915134919440-
GWHAAZE00000007exon3491683334916888-
GWHAAZE00000007exon3491593734916054-
GWHAAZE00000007exon3491541334915493-
GWHAAZE00000007exon3491379534913864-
GWHAAZE00000007exon3491347934913701-
GWHAAZE00000007exon3491327534913398-
GWHAAZE00000007exon3491244634912520-
GWHAAZE00000007exon3491220334912364-
GWHAAZE00000007CDS3493706434938762-
GWHAAZE00000007CDS3493600534936060-
GWHAAZE00000007CDS3493433334934578-
GWHAAZE00000007CDS3493342934933665-
GWHAAZE00000007CDS3493200134932120-
GWHAAZE00000007CDS3493116834931299-
GWHAAZE00000007CDS3492865534928789-
GWHAAZE00000007CDS3492810034928169-
GWHAAZE00000007CDS3492793734927995-
GWHAAZE00000007CDS3492769434927814-
GWHAAZE00000007CDS3492728934927380-
GWHAAZE00000007CDS3492704434927069-
GWHAAZE00000007CDS3492665934926746-
GWHAAZE00000007CDS3492647534926540-
GWHAAZE00000007CDS3492625934926374-
GWHAAZE00000007CDS3492584934925956-
GWHAAZE00000007CDS3492215334922225-
GWHAAZE00000007CDS3492195634922048-
GWHAAZE00000007CDS3492159734921692-
GWHAAZE00000007CDS3492140834921493-
GWHAAZE00000007CDS3492061234920690-
GWHAAZE00000007CDS3492036634920479-
GWHAAZE00000007CDS3492008434920179-
GWHAAZE00000007CDS3491994234920005-
GWHAAZE00000007CDS3491915134919440-
GWHAAZE00000007CDS3491683334916888-
GWHAAZE00000007CDS3491593734916054-
GWHAAZE00000007CDS3491541334915493-
GWHAAZE00000007CDS3491379534913864-
GWHAAZE00000007CDS3491347934913701-
GWHAAZE00000007CDS3491327534913398-
GWHAAZE00000007CDS3491244634912520-
GWHAAZE00000007CDS3491220334912364-
Transcript Sequence

Network for GWHGAAZE024104

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.7zf-RING_UBOX16581.20E-06
PF00400.33WD405535830.091
PF00400.33WD406747040.0098
PF07517.15SecA_DEAD8519981.20E-56
PF07517.15SecA_DEAD100011838.70E-31
PF01043.21SecA_PP_bind103411402.40E-21
PF07516.14SecA_SW150317435.80E-28
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K03070secA Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0017038biological_processprotein import
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.580
SRR3591706second leaf2.942
SRR3591707mature leaf4.796
SRR3591708Shoot apex4.732
SRR3591709Stem5.029
SRR3591710White floral bud5.048
SRR3591711White flower5.997
SRR3591712Green floral bud3.761
SRR3591713Yellow flower5.069
SRP173429 SRR8316895Juvenile bud stage 2.116
SRR8316896Juvenile bud stage 2.922
SRR8316897Juvenile bud stage 1.055
SRR8316894Third green stage 1.445
SRR8316900Third green stage 3.281
SRR8316901Third green stage 3.404
SRR8316898Complete white stage 0.798
SRR8316899Complete white stage 3.573
SRR8316903Complete white stage 1.772
SRR8316902Silver flowering stage1.509
SRR8316904Silver flowering stage2.135
SRR8316905Silver flowering stage1.116
SRR8316906Gold flowering stage 3.454
SRR8316907Gold flowering stage 3.529
SRR8316908Gold flowering stage 2.347
SRP132670SRR6706286Control2.477
SRR6706287Light intensity 50%2.879
SRR6706288Light intensity 20%3.064
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.437
CNS0095593Slightly white alabastrum(diploid) 21.400
CNS0095594Slightly white alabastrum(diploid) 31.782
CNS0095595Whole white alabastrum(diploid) 21.410
CNS0095596Whole white alabastrum(diploid) 31.147
CNS0095597Whole white alabastrum(diploid) 41.409
CNS0095598Silvery flower (diploied) 12.381
CNS0095599Silvery flower (diploied) 22.133
CNS0095600Silvery flower (diploied) 32.386
CNS0095601Golden flower (diploid) 11.747
CNS0095602Golden flower (diploid) 22.919
CNS0095603Golden flower (diploid) 32.866
CNS0095604Slightly white alabastrum(tetraploid) 11.603
CNS0095605Slightly white alabastrum(tetraploid) 21.006
CNS0095606Slightly white alabastrum(tetraploid) 32.723
CNS0095607Whole white alabastrum(tetraploid) 10.783
CNS0095608Whole white alabastrum(tetraploid) 20.360
CNS0095609Whole white alabastrum(tetraploid) 31.863
CNS0095610Silvery flower (tetraploid) 12.484
CNS0095611Silvery flower (tetraploid) 21.933
CNS0095612Silvery flower (tetraploid) 31.301
CNS0095613Golden flower (tetraploid) 10.910
CNS0095614Golden flower (tetraploid) 21.683
CNS0095615Golden flower (tetraploid) 31.009
CRA001975CRR073297Stem 12.880
CRR073298Stem 23.003
CRR073299Stem 31.718
CRR073300Leaf 12.687
CRR073301Leaf 22.292
CRR073302Leaf 31.363
CRR073303Juvenile bud 11.350
CRR073304Juvenile bud 20.990
CRR073305Juvenile bud 32.085
CRR073306Third green 10.364
CRR073307Third green 20.272
CRR073308Third green 30.411
CRR073309Second white 10.410
CRR073310Second white 20.701
CRR073311Second white 30.794
CRR073312Silver flowering 10.700
CRR073313Silver flowering 20.483
CRR073314Silver flowering 30.465
CRR073315Gold flowering 11.313
CRR073316Gold flowering 23.095
CRR073317Gold flowering 31.101
CRR073318Tawny withering 11.774
CRR073319Tawny withering 21.688
CRR073320Tawny withering 31.705