Gene detail

Detail information of GWHGAAZE024110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006472846.1	1.77305E-98	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5-like [Citrus sinensis]
COG	YP_003882441.1	0.000000001	2-Oxobutyrate oxidase
Swissprot	tr\|Q0WPW4\|ACCO5_ARATH	4E-79	1-aminocyclopropane-1-carboxylate oxidase 5
trEMBL	tr\|A0A067GL92\|A0A067GL92_CITSI	7E-99	Uncharacterized protein {ECO:0000313\|EMBL:KDO80498.1}
TAIR10	AT1G77330.1	1E-64	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34999743	35001004	+
GWHAAZE00000007	mRNA	34999743	35001004	+
GWHAAZE00000007	exon	34999743	34999844	+
GWHAAZE00000007	exon	35000139	35000365	+
GWHAAZE00000007	exon	35000758	35001004	+
GWHAAZE00000007	CDS	34999743	34999844	+
GWHAAZE00000007	CDS	35000139	35000365	+
GWHAAZE00000007	CDS	35000758	35001004	+

Transcript Sequence
>GWHTAAZE024144 ATGACGATTCCGGTGATCGACTTCTCTAAGCTCAATGGGAACGAGAGAGACAAGACAATGGCTCAGATTGCTAACGGGTGTCAAGAATGGGGATTTTTTCAGTTGGTGAACCATGGGATTTCGGTGGAGTTACTGGAGAGGGTGAAGAAAGTGTGCTCCGAGTGTTATAAGCAGGAGAGGGAAGAAGGTTTTATGAACTCGAAGCTCATTAAGTCATTACATGAATTAGTGGAGAAGAAGAGCGTTCAAAAGCTGGAAAATGTGGATTGGGAGGATGTATTCCTTCTCTCGGACGATAATGATTGGCCATCAAATACCCTAGGATTCAAGGAAACCATGGCTGAATACCGGGCTGAACTAAAGAAACTAGCAGAGAAGGTCATGGAAGTGATGGATAAAAACTTGGGCTTACAAAAGGGACACATCAAGAAAGCCTTCAATGGTGGAGAAGGAGACAACGCATTTTTTGGCACCAAGGTGAGCCACTACCCACCTTGCCCGCACCCTGAGAATGGTGGCCGGTCTTCGGGCCCACACAGATGCCGGAGGCGTCATTTTGCTCTTCCAAGACGATGA

Network for GWHGAAZE024110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	3	99	8.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.682
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.151
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.310
	SRR3591711	White flower	1.174
	SRR3591712	Green floral bud	0.526
	SRR3591713	Yellow flower	1.193
SRP173429	SRR8316895	Juvenile bud stage	0.271
	SRR8316896	Juvenile bud stage	0.243
	SRR8316897	Juvenile bud stage	0.193
	SRR8316894	Third green stage	0.190
	SRR8316900	Third green stage	0.383
	SRR8316901	Third green stage	0.361
	SRR8316898	Complete white stage	1.780
	SRR8316899	Complete white stage	0.244
	SRR8316903	Complete white stage	1.472
	SRR8316902	Silver flowering stage	2.053
	SRR8316904	Silver flowering stage	3.011
	SRR8316905	Silver flowering stage	1.695
	SRR8316906	Gold flowering stage	4.769
	SRR8316907	Gold flowering stage	5.132
	SRR8316908	Gold flowering stage	3.915
SRP132670	SRR6706286	Control	0.130
	SRR6706287	Light intensity 50%	0.224
	SRR6706288	Light intensity 20%	0.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.173
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.132
	CNS0095595	Whole white alabastrum(diploid) 2	0.066
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.440
	CNS0095598	Silvery flower (diploied) 1	1.483
	CNS0095599	Silvery flower (diploied) 2	1.085
	CNS0095600	Silvery flower (diploied) 3	1.431
	CNS0095601	Golden flower (diploid) 1	0.640
	CNS0095602	Golden flower (diploid) 2	1.126
	CNS0095603	Golden flower (diploid) 3	1.530
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.543
	CNS0095610	Silvery flower (tetraploid) 1	2.019
	CNS0095611	Silvery flower (tetraploid) 2	2.704
	CNS0095612	Silvery flower (tetraploid) 3	3.312
	CNS0095613	Golden flower (tetraploid) 1	4.224
	CNS0095614	Golden flower (tetraploid) 2	1.929
	CNS0095615	Golden flower (tetraploid) 3	4.885
CRA001975	CRR073297	Stem 1	0.006
	CRR073298	Stem 2	0.325
	CRR073299	Stem 3	0.010
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.162
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.130
	CRR073308	Third green 3	0.539
	CRR073309	Second white 1	1.495
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	1.450
	CRR073312	Silver flowering 1	0.898
	CRR073313	Silver flowering 2	0.279
	CRR073314	Silver flowering 3	1.312
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.143
	CRR073317	Gold flowering 3	0.167
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000