Gene detail

Detail information of GWHGAAZE024112

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284607.2	0	PREDICTED: NAD kinase 2, chloroplastic [Vitis vinifera]
COG	YP_004603494.1	1E-41	inorganic polyphosphate/ATP-NAD kinase
Swissprot	tr\|Q9C5W3\|NADK2_ARATH	0	NAD kinase 2, chloroplastic (Precursor)
trEMBL	tr\|F6H0I3\|F6H0I3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45455.1}
TAIR10	AT1G21640.1	0	NAD kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35003069	35013371	-
GWHAAZE00000007	mRNA	35003069	35013371	-
GWHAAZE00000007	exon	35003069	35003272	-
GWHAAZE00000007	exon	35004549	35004650	-
GWHAAZE00000007	exon	35006102	35006176	-
GWHAAZE00000007	exon	35006572	35006796	-
GWHAAZE00000007	exon	35007439	35007580	-
GWHAAZE00000007	exon	35007948	35008069	-
GWHAAZE00000007	exon	35009971	35010924	-
GWHAAZE00000007	exon	35010986	35011086	-
GWHAAZE00000007	exon	35011221	35011508	-
GWHAAZE00000007	exon	35011589	35011814	-
GWHAAZE00000007	exon	35012219	35012243	-
GWHAAZE00000007	exon	35013256	35013371	-
GWHAAZE00000007	CDS	35013256	35013371	-
GWHAAZE00000007	CDS	35012219	35012243	-
GWHAAZE00000007	CDS	35011589	35011814	-
GWHAAZE00000007	CDS	35011221	35011508	-
GWHAAZE00000007	CDS	35010986	35011086	-
GWHAAZE00000007	CDS	35009971	35010924	-
GWHAAZE00000007	CDS	35007948	35008069	-
GWHAAZE00000007	CDS	35007439	35007580	-
GWHAAZE00000007	CDS	35006572	35006796	-
GWHAAZE00000007	CDS	35006102	35006176	-
GWHAAZE00000007	CDS	35004549	35004650	-
GWHAAZE00000007	CDS	35003069	35003272	-

Transcript Sequence
>GWHTAAZE024146 ATGGGTTCGAGCTGCAGAGGAAGGACCAGCGATTGTTTCAACGGCGTCGTTTCAAGTTTGTTATCAGTGCTGAGCTCTTTAGGCCCTTTTCAGTTGACATTGGATTGGATTCTCAGGCACCAATGCACCATCAAACTCGAGACTTCACAGTCCAATGATTTATCGCAGTTGCCTTGGGTTGGTCCACTCCCTGGGGATATCGCGGAAGTTGAGGCTTACTGTAGAATCTTTAGAGCCGCTGAACATCTCCACAATGCACTAATGGAGACTTTGTGCAACCCAGTAACTGGCGAATGTAGCGTCTCATATGCTTTCCCGTCCGAGGACAAAGAATTGCTTGAGGAGAAAATAGTATCTGTTCTTGGTTATATAAATCTAATGGAGGATAGGCTTCCACCACTTGCAGCTTTTCGGACTGAGATGAAGCGGTATTGCGAAAGCTTACATGTTGCTCTTGAAAATTATCTGACACCTGATGATGTTCAAAGATCAGATGTATGGAAGAAACTGCAAAATTTGAAAAATATTTGTTATGATTCAGGTTTTCCTCGTGGGAATGACTATCCACCACATGCGTTATTTGCAAATTGGAATCCCATTTATTTATCTACCTCAAGAGAAGAGATAGACAATTCCGAGGTGGCCTTTTGGACAGTGGAATTGGTTAAACTCCCTGTTGAAGTCGGTACTGTGCCTTCAATGGAGCAAGTTGAAAAATTTGCGGGTTTAGTGTCGAATTTGGATAAGCAAGCCGATTGTTTGGCTCGTCGAGGACCGAACTTTTTCTCCAAAACTAGAGTAAGTCCCATTGACATTCTATCACAAGATTCAAGAGTGGAAAAATTGGACAGTTCATTAGATTCAAAAGAAGGTACAAACTTTGAGGATAAAAATGGGCTGGTGACAGAGAAGTTGGACAAGACATATAATGGGGCCCAGAGTGTTGTTGATACCACATTGATGCACGTAGAGGACAGTAATGGAGTGGGACCAACGGTTGATTTCTTCAGTGAAGTCAACCCTCTTGAATCCCAGGTACCTCCTTCAAACATTTTCTCAAGAAAGGAAATGTCCGTGTTTTATAAGAAAAAGAAGGTTTCTCCTACGTCGTACTTTAATTATGAGAAGAAAAGGGTGGAGATATTGTCAGGATTGAGAGAGAACTATAATGGGATAATTTTGAGAAACAAAGTCAATGATGTGAATTCTGAATCAAAGATTACGGCAATAGGAAAGTCAAATGGGTCTCCATCAAATGAGAACTTATTTTCCAAGAAACAGAGTCCAGCTAATAATGGGACGCAACTTGATGATAATACTAGTAGTGTTTCCTCTCCAACTACCATAAATGGATTCAGTGCGACAAAGGAGTTAGAGAAGAAAGTTATATCATCAATTGTTACCACAGCCGAGAGGAAAAACAATGAAGCTTCTTCATCTCCAGGTGATAATGTTGGTTTAGAAGAACTGATTGAAGGAAACATGTGTGCTTCTGCAACTGGTGTTGTGAGAGTGCAGTCGAGAAGAAAGGCGGAGATGTTCTTAGTTCGTACAGATGGATTTTCTTGCAGCAGAGAAAAGGTAACGGAATCTTCGTTGGCCTTCACTCATCCAAGCACGCAGCAGCAGATGCTTATGTGGAAATCTTCGCCAAAGACTGTGTTATTGTTGAAGAAATTGGGTCAAGAATTAATGGAAGAAGCTAAAGAGGTTGCCTCTTTCTTGTATCACCAAGAGGGAATGAATGTTCTTGTTGAGCCCGACGTTCATGACATTTTTGCAAGAATCCCAGGGTTTGGATTTGTTCAGACCTTCTATAGTCAAGATACCAGTGATCTTCACGAGAGGGTTGATTTTGTGGCCTGCTTGGGAGGAGATGGGGTAATACTCCATGCTTCGAATTTATTTAGAGGCGCTGTTCCCCCTGTTGTCTCATTTAATCTCGGATCCCTTGGATTTCTTGCTACGCATACTTTTGATGAGTACAGGAAGGACTTAAGACAAGTAATCCATGGGAACAACACGCTGGATGGTGTTTACATAACTCTTAGAATGCGTCTCCGCTGCGAAATTTTCCGGAACGGAAAATCTATGCCTGGGAAAGTGTTTGACATTCTAAATGAAATTGTGGTTGATCGTGGTTCTAACCCGTATCTTTCCAAAATTGAATGTTATGAACATGAGCGCCTAATAACTACGGTGCAAGGGGATGGAGTCATAGTAGCCACACCTACCGGAAGTACAGCTTATTCTACAGCTGCTGGAGGTTCAATGGTGCATCCAAATGTTCCCTGCATGCTCTTTACACCAATCTGCCCGCATTCCCTATCATTCCGACCTGTTATACTTCCAGATTCTGCACGGCTGGAATTAAAGATCCCACAAGATGCACGGAGCAATGCGTGGGTCTCGTTTGACGGGAAGAGAAGACAGCAACTGTCGAGAGGAGATTCGGTACGGATACACATGAGCCAGCATCCACTTCCAACGGTCAACAAGTGCGACCAAACGGGCGATTGGTTTTGCAGCTTGATTCGCTGCCTCAATTGGAATGAACGGCTGGATCAGAAGGCACTGTAA

Network for GWHGAAZE024112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01513.22	NAD_kinase	562	832	1.10E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00858	ppnK, NADK	Metabolic pathways	map01100
K00858	ppnK, NADK	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0019674	biological_process	NAD metabolic process
GO:0006741	biological_process	NADP biosynthetic process
GO:0003951	molecular_function	NAD+ kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.113
	SRR3591706	second leaf	24.412
	SRR3591707	mature leaf	67.412
	SRR3591708	Shoot apex	18.742
	SRR3591709	Stem	20.580
	SRR3591710	White floral bud	57.201
	SRR3591711	White flower	45.624
	SRR3591712	Green floral bud	15.417
	SRR3591713	Yellow flower	40.596
SRP173429	SRR8316895	Juvenile bud stage	8.559
	SRR8316896	Juvenile bud stage	10.937
	SRR8316897	Juvenile bud stage	6.719
	SRR8316894	Third green stage	4.895
	SRR8316900	Third green stage	8.867
	SRR8316901	Third green stage	8.616
	SRR8316898	Complete white stage	20.952
	SRR8316899	Complete white stage	20.400
	SRR8316903	Complete white stage	42.664
	SRR8316902	Silver flowering stage	17.593
	SRR8316904	Silver flowering stage	34.966
	SRR8316905	Silver flowering stage	17.966
	SRR8316906	Gold flowering stage	37.054
	SRR8316907	Gold flowering stage	32.500
	SRR8316908	Gold flowering stage	42.721
SRP132670	SRR6706286	Control	11.047
	SRR6706287	Light intensity 50%	10.654
	SRR6706288	Light intensity 20%	9.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.500
	CNS0095593	Slightly white alabastrum(diploid) 2	6.557
	CNS0095594	Slightly white alabastrum(diploid) 3	7.418
	CNS0095595	Whole white alabastrum(diploid) 2	8.228
	CNS0095596	Whole white alabastrum(diploid) 3	4.347
	CNS0095597	Whole white alabastrum(diploid) 4	7.959
	CNS0095598	Silvery flower (diploied) 1	32.850
	CNS0095599	Silvery flower (diploied) 2	32.776
	CNS0095600	Silvery flower (diploied) 3	63.755
	CNS0095601	Golden flower (diploid) 1	36.010
	CNS0095602	Golden flower (diploid) 2	62.125
	CNS0095603	Golden flower (diploid) 3	61.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.360
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.879
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.646
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.439
	CNS0095610	Silvery flower (tetraploid) 1	76.713
	CNS0095611	Silvery flower (tetraploid) 2	88.993
	CNS0095612	Silvery flower (tetraploid) 3	98.156
	CNS0095613	Golden flower (tetraploid) 1	59.781
	CNS0095614	Golden flower (tetraploid) 2	76.917
	CNS0095615	Golden flower (tetraploid) 3	83.112
CRA001975	CRR073297	Stem 1	10.864
	CRR073298	Stem 2	9.254
	CRR073299	Stem 3	8.077
	CRR073300	Leaf 1	5.153
	CRR073301	Leaf 2	5.208
	CRR073302	Leaf 3	4.065
	CRR073303	Juvenile bud 1	2.856
	CRR073304	Juvenile bud 2	3.572
	CRR073305	Juvenile bud 3	5.336
	CRR073306	Third green 1	6.865
	CRR073307	Third green 2	6.423
	CRR073308	Third green 3	6.846
	CRR073309	Second white 1	5.801
	CRR073310	Second white 2	9.160
	CRR073311	Second white 3	9.679
	CRR073312	Silver flowering 1	6.547
	CRR073313	Silver flowering 2	3.738
	CRR073314	Silver flowering 3	5.650
	CRR073315	Gold flowering 1	30.510
	CRR073316	Gold flowering 2	54.596
	CRR073317	Gold flowering 3	21.648
	CRR073318	Tawny withering 1	8.198
	CRR073319	Tawny withering 2	6.913
	CRR073320	Tawny withering 3	4.791